Protein Info for MPMX19_02622 in Azospirillum sp. SherDot2

Annotation: Nucleotide-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 337 PF03668: RapZ-like_N" amino acids 24 to 176 (153 residues), 137.9 bits, see alignment E=2.6e-44 PF22740: PapZ_C" amino acids 183 to 302 (120 residues), 156.5 bits, see alignment E=3.4e-50

Best Hits

Swiss-Prot: 67% identical to Y2868_RHOCS: Nucleotide-binding protein RC1_2868 (RC1_2868) from Rhodospirillum centenum (strain ATCC 51521 / SW)

KEGG orthology group: K06958, UPF0042 nucleotide-binding protein (inferred from 84% identity to azl:AZL_000680)

Predicted SEED Role

"Hypothetical ATP-binding protein UPF0042, contains P-loop"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (337 amino acids)

>MPMX19_02622 Nucleotide-binding protein (Azospirillum sp. SherDot2)
MKPPDTLMSDVPTDPAAPAARGRIVLVTGMSGAGMSVALKALEDLGYEAVDNLRLSLVPA
LIRQADPKRRPLALVIDSRTRDFSAQNFLDELEELRRDGDLDVRLVFLECGDEVLQRRFT
ETRRRHPLAEDRTVPDGIQRERALLFPLKEEADVTIDTTQLSIHDLRRILSGHFRRDAQA
ALQVFVTSFSFRQGLPREADLVFDVRFLTNPHYDPELRPLTGLNPAVAARVESDPDFPAF
FGNLTELLRPLLPRYNQEGKSYLTIAIGCTGGKHRSVFIAERLAAWLKEQGLRVNLSHRE
LERLGLRTAGAGPASNQQANNQQTGSQQANHQANHQG