Protein Info for MPMX19_02577 in Azospirillum sp. SherDot2

Annotation: sugar efflux transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 437 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 54 to 75 (22 residues), see Phobius details amino acids 86 to 105 (20 residues), see Phobius details amino acids 111 to 132 (22 residues), see Phobius details amino acids 144 to 164 (21 residues), see Phobius details amino acids 175 to 194 (20 residues), see Phobius details amino acids 224 to 248 (25 residues), see Phobius details amino acids 261 to 278 (18 residues), see Phobius details amino acids 290 to 309 (20 residues), see Phobius details amino acids 315 to 337 (23 residues), see Phobius details amino acids 349 to 369 (21 residues), see Phobius details amino acids 384 to 404 (21 residues), see Phobius details PF07690: MFS_1" amino acids 25 to 325 (301 residues), 131.6 bits, see alignment E=1.7e-42 amino acids 232 to 416 (185 residues), 39.4 bits, see alignment E=1.8e-14

Best Hits

KEGG orthology group: None (inferred from 48% identity to rce:RC1_3331)

Predicted SEED Role

"Arabinose efflux permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (437 amino acids)

>MPMX19_02577 sugar efflux transporter (Azospirillum sp. SherDot2)
MSQATRPAAPTALTPDERRITLVIAAVQFINILDFMMVMPLGPDFARALGIPAAHIGYIG
GSYTAAAAVAGLIGSMLLDRFDRRRALAVAMAGLIVSTALGGLAWDFPSLLAARVLAGLF
GGPAVAVAIATLTDQVAPQRRGQAMGAVMSAFSLSAIAGVPVGLELALYGGWRLPFFAVA
AAGLVVAVAAIAILPPQRGHLAAGTGVKTGAWVRMTALLSRRKVWLAYATVALVQVQQFM
IVPNIAAYVQGNLGFPRDHLSLVYMTGGTLSFFAARWAGRLVDRHGSSAITFAATVGLSV
VIFTAFIGYRPWMPVLGLFPFFMTFVGVRMVANGAAFSRVPDPQERAGFMALVSAVQHLS
SAFGAFLSAEILTNAPDGRLEHVSTMATVSIAVGLAIPVLTLWLERATRPAATPSPAPMV
TDTVLEDTVLDGAGQSR