Protein Info for MPMX19_02364 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 214 transmembrane" amino acids 20 to 38 (19 residues), see Phobius details amino acids 50 to 74 (25 residues), see Phobius details amino acids 86 to 104 (19 residues), see Phobius details amino acids 109 to 128 (20 residues), see Phobius details amino acids 137 to 157 (21 residues), see Phobius details amino acids 164 to 183 (20 residues), see Phobius details amino acids 193 to 213 (21 residues), see Phobius details PF03006: HlyIII" amino acids 19 to 206 (188 residues), 81.1 bits, see alignment E=5.1e-27

Best Hits

KEGG orthology group: K11068, hemolysin III (inferred from 88% identity to azl:AZL_002160)

Predicted SEED Role

"COG1272: Predicted membrane protein hemolysin III homolog"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (214 amino acids)

>MPMX19_02364 hypothetical protein (Azospirillum sp. SherDot2)
MPDAHQFPVYSVGERRADAVVHAIGVTAGLAGFVWLLNEGVFSGAVPVHTALALTVYGLG
LVGMLTASAAYNLAPPGFGKAVLRRVDHAMIFVMIAGTYTPFTLGLGQGIGLGGAVWGGA
AFGAALKLRFPGRFNRLGLALYLGLGWAVVTALEPLGSALSAPALWLLVAGGLVYTVGVV
FHLMDRMPYNNAVWHLFVLTAASCHFAAIAVAFL