Protein Info for MPMX19_02317 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 239 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 50 to 70 (21 residues), see Phobius details amino acids 87 to 104 (18 residues), see Phobius details amino acids 125 to 148 (24 residues), see Phobius details amino acids 154 to 175 (22 residues), see Phobius details amino acids 187 to 207 (21 residues), see Phobius details amino acids 213 to 231 (19 residues), see Phobius details PF03741: TerC" amino acids 16 to 203 (188 residues), 160.3 bits, see alignment E=2.1e-51

Best Hits

Swiss-Prot: 59% identical to YGDQ_ECOL6: UPF0053 inner membrane protein YgdQ (ygdQ) from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

KEGG orthology group: None (inferred from 95% identity to azl:AZL_002460)

Predicted SEED Role

"Integral membrane protein TerC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (239 amino acids)

>MPMX19_02317 hypothetical protein (Azospirillum sp. SherDot2)
MLDLLSDPNVWASLLTLTALEIVLGIDNIIFISIMASKLPPERQHSARRVGLALALLTRL
ALLASIAWVAQLTQPLFTVAGWDVSGRDVILILGGLFLLAKGTLEIHHTVEGHEEGGSAP
KHATFTSVVIQIMFLDIVFSLDSVITAVGMSDHLPVMVAAVVIAMAVMLFASGPVGDFVN
RHVTVKMLALSFLLLVGVALVADGFGFHIPKGYLYFAIAFSTLVEALNLLARRKHNAAH