Protein Info for MPMX19_02285 in Azospirillum sp. SherDot2

Annotation: ATP-dependent RecD-like DNA helicase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 798 PF13604: AAA_30" amino acids 352 to 567 (216 residues), 126.8 bits, see alignment E=2.7e-40 PF13245: AAA_19" amino acids 356 to 524 (169 residues), 111.2 bits, see alignment E=1.3e-35 PF13538: UvrD_C_2" amino acids 716 to 762 (47 residues), 40.7 bits, see alignment 5.2e-14

Best Hits

Predicted SEED Role

"RecD-like DNA helicase YrrC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (798 amino acids)

>MPMX19_02285 ATP-dependent RecD-like DNA helicase (Azospirillum sp. SherDot2)
MSAMVVGVPETLAYDVIVSKVINFRLGGVIFVGTVAGPFGDPREGTQIRAMVPGGVLAGA
EPIEGETWHLCGAWATSDRYGEQFHARMARRARPAGHLVVSYLAYHVPGIGTGRAKRLWD
AFEERLPEVLDAGDVLALAQVIAPRFPTLSVRLAADVVTQWKEATVEPAVMAWLDGLGVT
DARFVRRAVCILGERTRSTLEANPYILAAFLDRWKRVDELGRRLMAEVGTADVEDHPNRL
VGAVDFVVRKAITEGGHTVIDEATLRRGLARCFGGQLSSRRVTDAIRLGEVNDAILPYGQ
GNWRAPGCAALEDALVARFRAMWDIRELTAVEIPSGKALEACLRALAPSASLHPEQREAV
LRCIQAPLAVLTGGAGVGKTTTLRTIVDLWEFLDGNVQMVALAGKAALRMSQATGRPAMT
IHRFLNGLLLREASIERNAAKDQANGERGLQKRSGDRLLSELSEEIPASEFDVEEGPYLD
NRSLLVVDEASMVDLGQWHRLVQAMPPGCRLLLVGDVGQLPPIGFGLVFHRLAHIPALTA
ELQTIHRQREGGGIPEVSRAIRAGIVPELQPFGGRADGVFLVPCPMAEIPSQIERVVADL
GGFGSTHAVQIVAPVNQGDAGVDGLNERFHNRHREATGAGVVTPEYPEVKEVKGFLGNVF
GVGEPAIHRRNDYQRGLFNGSLGHVVSVDVQRRALTALFDGEPHEFVGDELIDLALAYCL
TCHRLQGSQSERVVVALYDHPLVDISWIYTAITRAERQVVLVGDPATLAAAVSRRPAWTN
RRVAFRLDLENVEGGPEY