Protein Info for MPMX19_02223 in Azospirillum sp. SherDot2

Annotation: Ammonia channel

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 480 signal peptide" amino acids 1 to 46 (46 residues), see Phobius details transmembrane" amino acids 61 to 83 (23 residues), see Phobius details amino acids 94 to 116 (23 residues), see Phobius details amino acids 160 to 181 (22 residues), see Phobius details amino acids 188 to 209 (22 residues), see Phobius details amino acids 216 to 244 (29 residues), see Phobius details amino acids 256 to 277 (22 residues), see Phobius details amino acids 289 to 310 (22 residues), see Phobius details amino acids 320 to 339 (20 residues), see Phobius details amino acids 345 to 364 (20 residues), see Phobius details amino acids 376 to 395 (20 residues), see Phobius details amino acids 428 to 450 (23 residues), see Phobius details TIGR00836: ammonium transporter" amino acids 59 to 478 (420 residues), 454.4 bits, see alignment E=1.8e-140 PF00909: Ammonium_transp" amino acids 61 to 478 (418 residues), 402.2 bits, see alignment E=1.1e-124

Best Hits

KEGG orthology group: K03320, ammonium transporter, Amt family (inferred from 96% identity to azl:AZL_003060)

Predicted SEED Role

"Ammonium transporter" in subsystem Ammonia assimilation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (480 amino acids)

>MPMX19_02223 Ammonia channel (Azospirillum sp. SherDot2)
MNRLFLMAAPMMAVALGAVGMPAAALAQDPAAAAAAAAAAAAAAAAAAAPAAPALNGGDT
AWMLISTALVLMMTIPGLALFYGGMVRKMNVLSTVMQSFAITCLISVLWYVIGYSLAFTG
TGAYVGGLDRLFLNGLDFTKAFVLGEATGSGVPTTIPEPVFMMFQMTFAIITPALITGAF
ADRMKFSSLLVFTALWSIVVYAPIAHWVWYPSGFLFGLGVLDFAGGTVVHINAGVAGLVA
ALVIGKRKGYPKEAFMPHNLVLSLIGASLLWVGWFGFNAGSALTAGPRAGMALAATHIAT
AGAAMGWLFAEWIVKGKPSILGIISGAVAGLVAVTPAAGFVDPTGAIVIGIVAGVVCFWS
ATSLKHMLGYDDSLDAFGVHGVGGLIGAILTGVFAKMSVSNSEGGFASVLQADPKATLGL
LEGNAAAVWIQVQGVLYTMVWCAVATFVLLKVVDVVMGLRVEEDVERDGLDLALHGESIH