Protein Info for MPMX19_02199 in Azospirillum sp. SherDot2

Annotation: Inner membrane ABC transporter permease protein YdcV

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 275 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 63 to 90 (28 residues), see Phobius details amino acids 102 to 125 (24 residues), see Phobius details amino acids 131 to 154 (24 residues), see Phobius details amino acids 185 to 204 (20 residues), see Phobius details amino acids 236 to 257 (22 residues), see Phobius details PF00528: BPD_transp_1" amino acids 80 to 260 (181 residues), 59.7 bits, see alignment E=1.6e-20

Best Hits

KEGG orthology group: None (inferred from 96% identity to azl:AZL_003310)

Predicted SEED Role

"Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1)" in subsystem Polyamine Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (275 amino acids)

>MPMX19_02199 Inner membrane ABC transporter permease protein YdcV (Azospirillum sp. SherDot2)
MTAARFRRLLTGAYLMLFFGYLFLPLGIMAAATFNSSRFPTVTPWMGFTLGWFQALWEDQ
RMWAALGTSLLVGAGVIALAVPLGLAAALLLDRLHSRAKTVLYALMVSPLLTPGVIVGIS
TLVFWREWFGVSGGLFLTVVAQSSFIAAYAMLLFSARLERFDPALEEAALDLGATHGQVF
RRITLPYLMPAILSAALLAFLQSFENYNTTLFVRGLDTTLTVYIATKVRTGLTPAVNALS
LVLIALTVLGAVVYEILRRREARRQAGSAAALEPA