Protein Info for MPMX19_02111 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 726 signal peptide" amino acids 10 to 11 (2 residues), see Phobius details transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 357 to 379 (23 residues), see Phobius details PF22673: MCP-like_PDC_1" amino acids 109 to 242 (134 residues), 28.7 bits, see alignment E=2.3e-10 PF00672: HAMP" amino acids 396 to 428 (33 residues), 26.1 bits, see alignment (E = 1.3e-09) PF00015: MCPsignal" amino acids 532 to 687 (156 residues), 100.2 bits, see alignment E=1.9e-32

Best Hits

KEGG orthology group: K03406, methyl-accepting chemotaxis protein (inferred from 93% identity to azl:AZL_025010)

Predicted SEED Role

"methyl-accepting chemotaxis sensory transducer"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (726 amino acids)

>MPMX19_02111 hypothetical protein (Azospirillum sp. SherDot2)
MQTKSIQSKIAMLSGFCLAGTVAVLVGFAVLSTRSSNEFVTGNVERILESKTTESLQNLA
ATQAGLLRSEFDTALNAARTMASSFSSLADDGAPGNVLPERRREAFNGVLLSVLKRNPLF
NGTYSAWEPDTLDGRDEEFRGRRETGTDATGRFIPYWNRDQNGRIAMQPLVEYDSRDRHP
NGVMKGGWYIGPQETGRESVLDPLPYIVQGKQVFLATLSVPVVIGGKFRGVAGADFNLDF
VQQLSTKVSAAVFNGRSQVVIISNMGLIVAHSARPDLIGQSISTFDASWQADLASVQAGK
PHVDIEASTNMLRSFAPITLGNTEKPWAVLVQVPKDIVLADGMALASALGERANSNILWQ
VAVGALVALGAVAVMWVVAGGVARPIRASVAFAEGIAAGRFDQTLDVRQTDEVGALAEAL
RKMMAELKRMIDQRAEDQAKADAERRKAMLQLADTLEAQVMNVVDGVDRAAQSMTGTAQT
MTATATQTSQQAGVVANASQDASSNVQTVASATEELSASIQEIGESVNRSAQIAREAVEA
AQQANGQVLSLTEAAEKIGTVVQLIQDIASQTNLLALNATIEAARAGEAGKGFAVVAQEV
KSLASQTAKATEEIAGHVTGMQRVTGETAGAIKGIGGIIAQIDEISTAIAAAVEEQGSAT
AEIARNVQQAASGTQEVTKTIADVRSAAVEAGHSAENVLSVSGQLANDAGRLRTAVNGFL
STIRAA