Protein Info for MPMX19_01944 in Azospirillum sp. SherDot2

Annotation: putative membrane transporter protein YfcA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 247 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details amino acids 30 to 35 (6 residues), see Phobius details transmembrane" amino acids 44 to 60 (17 residues), see Phobius details amino acids 72 to 92 (21 residues), see Phobius details amino acids 101 to 123 (23 residues), see Phobius details amino acids 135 to 165 (31 residues), see Phobius details amino acids 177 to 197 (21 residues), see Phobius details amino acids 201 to 219 (19 residues), see Phobius details amino acids 226 to 244 (19 residues), see Phobius details PF01925: TauE" amino acids 6 to 241 (236 residues), 142.8 bits, see alignment E=7.3e-46

Best Hits

KEGG orthology group: K07090, (no description) (inferred from 93% identity to azl:AZL_023390)

Predicted SEED Role

"membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (247 amino acids)

>MPMX19_01944 putative membrane transporter protein YfcA (Azospirillum sp. SherDot2)
MLTLLLIVSAFFAGVLNAVAGGGSFLTFPALILAGVPPLNANATSTVAVSPGALASAFGY
RRELGRIREVHLPSFLGISLVGGLLGALLLLWTPQRTFEVIVPWLLLFATLLFAIGPTAS
AWVRRNVTIGHGTVLAVQFLIAVYGGYFGGGIGILILATLGVFGLTDLHAMNGLKSLVSG
CLNAVAVAAFVAGGAVYWTEALIMLVAAMAGGYAGASVARHIPPPVLRKLVILVGAAMTI
YFFLTKA