Protein Info for MPMX19_01899 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 669 signal peptide" amino acids 12 to 18 (7 residues), see Phobius details amino acids 36 to 38 (3 residues), see Phobius details transmembrane" amino acids 19 to 35 (17 residues), see Phobius details amino acids 300 to 322 (23 residues), see Phobius details PF00672: HAMP" amino acids 317 to 369 (53 residues), 33.6 bits, see alignment 4.1e-12 PF00015: MCPsignal" amino acids 478 to 631 (154 residues), 101.5 bits, see alignment E=4.9e-33

Best Hits

KEGG orthology group: None (inferred from 90% identity to azl:AZL_023010)

Predicted SEED Role

"Methyl-accepting chemotaxis protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (669 amino acids)

>MPMX19_01899 hypothetical protein (Azospirillum sp. SherDot2)
MSLFNRFSVGTKITAASAGILVFLVLIGGIGVAALSEAGGAVDTYRQLGQQTNELGRIQA
LMLEMRQQATRFLLTGDPEVGATVRRTAQEAAQSIDKTRALVTDPALLQTADHMAQEIAQ
YQEAFAAAMDFQAQRSKAISELDEIGPRLESALDNIMDSASTGGDTDAAYLAGMALRHML
SARISATRYNIDGSPALASQARSQFTDAASRGGAMMAKLTDMDRRKMAMSYTAMLRVYIT
GFNGVVKATTERDRLVKEVLIPVGDSIANEAEQLTVASVDAQKSLGMATGAFIDKARGGM
TIASLIAVVLGLATALLIGRGLSRPVVAMTDRMTRLAGGDRSVDIPGLQRADEIGGMAKA
LQVFKDSLIESDRLAEVQRADHEAQRSRGERIDRLTQEFDRLVLQALGRVSAAATQLQAT
AQTMSATAEQTTRQADAVANASLDATGNVETVAAATEELTASIAEIGRQVAESTRIAGQA
VATAEKTDGTVRGLVDAAQRIGEVVQLITDIASQTNLLALNATIEAARAGEAGKGFAVVA
SEVKSLASQTAKATEEIGSQIAGIQEISRQAAGAIAEIGRVIAEINHISTTIAAAVEEQG
AATKEISRNVQQAARGTQQVSGNIAGVSEAAASTGDASREVLTAADGLNHEATDLRGFVS
RFLSDMRAA