Protein Info for MPMX19_01885 in Azospirillum sp. SherDot2

Annotation: Ammonia channel

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 408 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 51 to 69 (19 residues), see Phobius details amino acids 93 to 114 (22 residues), see Phobius details amino acids 124 to 144 (21 residues), see Phobius details amino acids 164 to 185 (22 residues), see Phobius details amino acids 206 to 224 (19 residues), see Phobius details amino acids 235 to 256 (22 residues), see Phobius details amino acids 263 to 280 (18 residues), see Phobius details amino acids 285 to 303 (19 residues), see Phobius details amino acids 315 to 336 (22 residues), see Phobius details amino acids 348 to 373 (26 residues), see Phobius details PF00909: Ammonium_transp" amino acids 12 to 400 (389 residues), 279.1 bits, see alignment E=2.6e-87

Best Hits

KEGG orthology group: None (inferred from 98% identity to azl:AZL_022880)

Predicted SEED Role

"Ammonium transporter" in subsystem Ammonia assimilation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (408 amino acids)

>MPMX19_01885 Ammonia channel (Azospirillum sp. SherDot2)
MDAAKTGGDVLFVLMGAVMVLAMHCGFALLEVGTVRRKNQVNALVKILSDFAMSTIAYFF
VGYAVAYGIDFFADAHTLVGKGSGGFAAYGYDLVKFFFLATFAAAVPAIVSGGIAERARF
WPQAGATLALIALFYPLLEGTVWGTRFGLQGWMAATFGQPFHDFAGSVVVHAFGGWVALG
AVLNLGNRRGRYRPNGSLIAIPPSNIPFLALGAWVLCVGWFGFNVMSAQVLDGVTGLVAL
NSLMAMVGGIVTSLVISRTDPGFVHNGALAGLVAVCAGSDVMHPLGALVTGGIAGLLFVW
AFNKCQIDWKIDDVLGVWPLHGLCGLTGGLLAGVFGQEALGGLGGVSILSQIVGTLGGAG
FGFASGLAVYGLLRVTVGIRLDPEQEYKGADLSLHHITAYPEEDAPTL