Protein Info for MPMX19_01881 in Azospirillum sp. SherDot2

Annotation: putative transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 411 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 29 to 49 (21 residues), see Phobius details amino acids 57 to 75 (19 residues), see Phobius details amino acids 95 to 124 (30 residues), see Phobius details amino acids 137 to 155 (19 residues), see Phobius details amino acids 170 to 196 (27 residues), see Phobius details amino acids 221 to 238 (18 residues), see Phobius details amino acids 244 to 260 (17 residues), see Phobius details amino acids 272 to 295 (24 residues), see Phobius details amino acids 311 to 336 (26 residues), see Phobius details amino acids 343 to 368 (26 residues), see Phobius details amino acids 388 to 409 (22 residues), see Phobius details PF03600: CitMHS" amino acids 25 to 334 (310 residues), 171.5 bits, see alignment E=2.7e-54 PF02040: ArsB" amino acids 36 to 197 (162 residues), 25.2 bits, see alignment E=1.1e-09

Best Hits

KEGG orthology group: None (inferred from 94% identity to azl:AZL_022840)

Predicted SEED Role

"Arsenic efflux pump protein" in subsystem Arsenic resistance

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (411 amino acids)

>MPMX19_01881 putative transporter (Azospirillum sp. SherDot2)
MTATILFLFAATYLGMALGGFPGLRIDRTGIALVAAILLLATGALDTAAAVSAIDFPTIF
ILLGLMILSAQYAGSGFYDWCALKVAQAAKSPARLLAVIVLVAGGLSAVLANDVVVFAMT
PMLCLGLQARKLDPRPYLIGLAGAANAGSAATMIGNPQNILIGQVGHLDFWRFLAICGGP
ALAAMAIAYATVWLVWRGRFGMPQEGHGDAVQAAPKLDRWQLGKAVAATLVLLILFTRDI
PQEHAVLLIAGVMMVSRRMASRDMLGMVDWHLLVLFGALFAINHALGLTGIPTALVNDLS
AAGWLPDRLAVMLPLSLAGSNTIGNVPAVILLLAAWPSPPEGALYGLALLSTLAGNLLLP
GSLANIIVAERAAAAGVKLGFVEHARCGVPMALLSMAVAAVWLWAGGWMGL