Protein Info for MPMX19_01877 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 166 transmembrane" amino acids 20 to 39 (20 residues), see Phobius details PF13470: PIN_3" amino acids 21 to 135 (115 residues), 59.8 bits, see alignment E=4.7e-20 TIGR00305: putative toxin-antitoxin system toxin component, PIN family" amino acids 21 to 139 (119 residues), 39.9 bits, see alignment E=2.3e-14 PF01850: PIN" amino acids 23 to 140 (118 residues), 24.6 bits, see alignment E=3.3e-09

Best Hits

KEGG orthology group: None (inferred from 80% identity to azl:AZL_022800)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (166 amino acids)

>MPMX19_01877 hypothetical protein (Azospirillum sp. SherDot2)
MLSSDKAASDMVRSPIRPPVRAVLDTNILVAYALLGRAAARRHDAIRRCVERVRADRGLV
GSSETLAELREVLMRPTFDRYAAATERRAFLEGIGEEMTLVAPAAVGRLCRDPEDDMFLA
AAVGGSVPWLVTVDRQLLSVRQAGATRVLRPERFLEAVTVQDAPQA