Protein Info for MPMX19_01714 in Azospirillum sp. SherDot2

Annotation: tRNA-modifying protein YgfZ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 304 PF01571: GCV_T" amino acids 12 to 111 (100 residues), 33.2 bits, see alignment E=1.7e-12 TIGR03317: folate-binding protein YgfZ" amino acids 170 to 235 (66 residues), 76.7 bits, see alignment E=5.1e-26

Best Hits

KEGG orthology group: K06980, (no description) (inferred from 84% identity to azl:AZL_021130)

Predicted SEED Role

"Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (304 amino acids)

>MPMX19_01714 tRNA-modifying protein YgfZ (Azospirillum sp. SherDot2)
MSAGYAVLDQRSVVAVTGEDRKAFLQGLVSNDVLRVTPDHAAYALFLTPQGKFLHDFNLV
ESGAESDAVLLLDPETDRRADLLRRLKMYKLRSKIALEDRTEQLRVVVAFGDGTLEALGL
PAEPGAARAFAGGVAFTDPRLPALGARLFLPADGLAALEAAGLAPREVADYDRLRLSLGI
PDGTLDLIPEKSIPLESRMDALNAISWDKGCYMGQELTARTKYRALIKKKLFPVSVDGPA
PDAGTPVTLDGKEVGEMRSGRDGAALALLRLEDVQRAAENGLTFQAGAAVLTPREPGWDH
TTKG