Protein Info for MPMX19_01615 in Azospirillum sp. SherDot2

Annotation: Inner membrane protein YccF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 145 transmembrane" amino acids 12 to 40 (29 residues), see Phobius details amino acids 72 to 92 (21 residues), see Phobius details amino acids 98 to 117 (20 residues), see Phobius details PF03733: YccF" amino acids 7 to 57 (51 residues), 57.8 bits, see alignment E=6.9e-20 amino acids 79 to 128 (50 residues), 64.1 bits, see alignment E=7.6e-22

Best Hits

KEGG orthology group: None (inferred from 88% identity to azl:AZL_019720)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (145 amino acids)

>MPMX19_01615 Inner membrane protein YccF (Azospirillum sp. SherDot2)
MPLLSLLLNLLWLVTGGIWMALGWVLAAVLMAVSIIGLPWARSALTIAHYTLLPFGQTAV
RRDEFRGREDMGTGALGFIGNIVWFVLAGWWLALGHLVAAVGLAITIIGLPFAWAHLKLA
LLALWPVGTEIVPSDGVERRVTGRI