Protein Info for MPMX19_01610 in Azospirillum sp. SherDot2

Annotation: ATP-dependent DNA helicase PcrA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 781 PF00580: UvrD-helicase" amino acids 36 to 300 (265 residues), 299.5 bits, see alignment E=8.5e-93 PF13245: AAA_19" amino acids 40 to 283 (244 residues), 79.8 bits, see alignment E=6.7e-26 PF13361: UvrD_C" amino acids 305 to 635 (331 residues), 223.3 bits, see alignment E=1.9e-69

Best Hits

KEGG orthology group: K03657, DNA helicase II / ATP-dependent DNA helicase PcrA [EC: 3.6.4.12] (inferred from 94% identity to azl:AZL_019670)

Predicted SEED Role

"ATP-dependent DNA helicase UvrD/PcrA" in subsystem DNA repair, bacterial UvrD and related helicases

Isozymes

Compare fitness of predicted isozymes for: 3.6.4.12

Use Curated BLAST to search for 3.6.4.12

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (781 amino acids)

>MPMX19_01610 ATP-dependent DNA helicase PcrA (Azospirillum sp. SherDot2)
MSDAYDDDPLSHAAPAAGPASGFPAAAQRFAYLDGLNPTQRAAVEALDGPVLVLAGAGTG
KTRVLTTRLAHLLMTRRAAAFQILAVTFTNKAAREMRERVGHLMGIEPEGWWLGTFHALA
ARILRRHAELVGLKSNFTILDTDDQVRLIKQLLQAENIDSKKWPPRQVLGAIERWKDRGL
TPDRLGDADGGDVAGGRVVAIYRAYQERLRTLNACDFGDLLLHNLAIFQNHPDVLAEYHR
KFKYLLVDEYQDTNVAQYLWLRILSQAHKNICCVGDEDQSIYAWRGAEIGNILRFETDFP
GATIVKLEQNYRSTGHILAAASGLIANNQGRLGKTLWTEADGGERVKVKAVWDGEEEARW
VGEEIETLQRKGTSLAQIAVLVRAGFQTREFEERFITLGLPYKVLGGPRFYERQEIRDAL
AYFRVVNSGDDDLAFERIVNLPKRGVGPAAMQSLYTAARARGLSLTEAGWALTETDELKP
KLRATLRGLLQDFFRWRTLMATVPHTELARTVLDESGYTRMWQEDKTPEAPGRLENLKEL
ITAMAEFENLPGFLEHVALVMENAEAAGIEQVTVMTLHGAKGLEFDHVFLPGWEEGVFPN
QRALDETGIAGLEEERRLAYVGLTRARRRAYVSHAANRRLYGNWVSAVPSRFVEEIPQDN
VEAEAANGLFAGSGGRGGFAGGAGAYGAGGSAGGFGGGFQFRGSTRQAPAPKTITLDQGA
YAVAPRPRPDAPFAKGARVFHQKFGYGTVVGVSEDKLEIDFDHSGSKKVMDSFVVPADKA
G