Protein Info for MPMX19_01602 in Azospirillum sp. SherDot2

Annotation: Outer membrane protein assembly factor BamD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 271 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details TIGR03302: outer membrane assembly lipoprotein YfiO" amino acids 8 to 241 (234 residues), 288.3 bits, see alignment E=2.3e-90 PF13512: TPR_18" amino acids 29 to 158 (130 residues), 68.7 bits, see alignment E=1.9e-22 PF13525: YfiO" amino acids 33 to 227 (195 residues), 188.1 bits, see alignment E=5.1e-59 PF13174: TPR_6" amino acids 74 to 105 (32 residues), 20.1 bits, see alignment 2.3e-07 amino acids 110 to 150 (41 residues), 21.8 bits, see alignment 6.3e-08 amino acids 206 to 238 (33 residues), 21.4 bits, see alignment 9e-08 PF13432: TPR_16" amino acids 76 to 122 (47 residues), 26.3 bits, see alignment 2.6e-09 amino acids 178 to 237 (60 residues), 21.1 bits, see alignment E=1.1e-07

Best Hits

Swiss-Prot: 49% identical to BAMD_CAUVC: Outer membrane protein assembly factor BamD (bamD) from Caulobacter vibrioides (strain ATCC 19089 / CB15)

KEGG orthology group: K05807, putative lipoprotein (inferred from 95% identity to azl:AZL_019590)

Predicted SEED Role

"competence lipoprotein ComL, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (271 amino acids)

>MPMX19_01602 Outer membrane protein assembly factor BamD (Azospirillum sp. SherDot2)
MLPRPYRLPLTAILLSAALSACSSTKEDAYVERPADQLMSEADAAMREESYKKAAKLYDE
VERQHPYADAASKAQLLAAYAQYQDLKYDDAILALDRFIQLHPGSPDVDYAYYMRALCYY
EQITDVRRDQRMTRRSLDALQEVVRRFPDSKYARDAKLKIDLTNDHLAGKEMEVGRFYLR
QHQYTAAINRFRAVVENYQTTSHVPEALHRLVECYLALGVTDEAKAAAAVLGHNFPGSEW
YTDSYALLVDANLRPERNEKSWLNRAWNSLF