Protein Info for MPMX19_01508 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 378 transmembrane" amino acids 219 to 237 (19 residues), see Phobius details PF21102: DprA_N" amino acids 9 to 74 (66 residues), 111.9 bits, see alignment E=1.6e-36 TIGR00732: DNA protecting protein DprA" amino acids 73 to 286 (214 residues), 215.5 bits, see alignment E=2.6e-68 PF02481: DNA_processg_A" amino acids 77 to 279 (203 residues), 233.9 bits, see alignment E=1.8e-73 PF17782: DprA_WH" amino acids 316 to 372 (57 residues), 65.5 bits, see alignment E=5.3e-22

Best Hits

KEGG orthology group: K04096, DNA processing protein (inferred from 90% identity to azl:AZL_018520)

Predicted SEED Role

"Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake" in subsystem Conserved gene cluster associated with Met-tRNA formyltransferase

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (378 amino acids)

>MPMX19_01508 hypothetical protein (Azospirillum sp. SherDot2)
MTQPRRPLTDAERLDWIRLIRTENVGPITFHRLLDQYGSAAKALDMLPDLARRGGRAKPL
RIASKAEAEREMQANRRFGARLLCACEPDYPEPLAAVDDAPPVISIMGHAHLLQRRAVAI
IGARNASLNGKKFAESLARDLGTAGLLVVSGLARGIDTAAHAGALASGTAAVLAGGIDVV
YPPENEGLYRDILAQGVVVAESAIGTQPQARHFPRRNRLISGLSLGVLVVEAALRSGSLI
TARMALEQGREVMAVPGSPLDPRCHGTNNLLRQGATLVERSDDVLRAIEPLRPPTLAERQ
PDLFSTPALTHGRAMEPDESDLAKARAVVLENLSPSPVTIDELVRGCQLSAPVVLTVVLE
LELAGRVQRLPGHQVSLA