Protein Info for MPMX19_01485 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 263 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details TIGR03170: flagella basal body P-ring formation protein FlgA" amino acids 123 to 255 (133 residues), 113.2 bits, see alignment E=4.5e-37 PF13144: ChapFlgA" amino acids 133 to 255 (123 residues), 107.3 bits, see alignment E=5.5e-35 PF08666: SAF" amino acids 136 to 193 (58 residues), 23.9 bits, see alignment E=5.2e-09

Best Hits

KEGG orthology group: K02386, flagella basal body P-ring formation protein FlgA (inferred from 91% identity to azl:AZL_018350)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (263 amino acids)

>MPMX19_01485 hypothetical protein (Azospirillum sp. SherDot2)
MIRHLANRRLPALLLGAALLTVPVMGFGIGQAAAAAAMAPAPAGSGLAPDVVYGMPHVEA
VLSDALSRVITAGRLQMELDSRAVELRAPQGAGGLAVENLYYSPVQGRFAAEIVVTGSQV
RLPVSGRAFGVVQIPVLSRRIIPGDVIGPGDIDWQDVRADQTTSDTAATDAQLIGMTPKR
GVSTNQPVRLRDLQSPRMVDKGSMVTITLTTQSMTLTTQGKALQDGGKGEVIRVVNTQSN
RIVEATVAGPNVVAVAKPGIIAQ