Protein Info for MPMX19_01476 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 846 TIGR00229: PAS domain S-box protein" amino acids 23 to 139 (117 residues), 24.8 bits, see alignment E=2e-09 amino acids 140 to 275 (136 residues), 30.7 bits, see alignment E=3e-11 amino acids 276 to 403 (128 residues), 48.8 bits, see alignment E=7.5e-17 PF08447: PAS_3" amino acids 29 to 125 (97 residues), 44.2 bits, see alignment E=5.9e-15 amino acids 167 to 260 (94 residues), 50.7 bits, see alignment E=5.4e-17 amino acids 303 to 390 (88 residues), 58.6 bits, see alignment E=1.9e-19 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 407 to 571 (165 residues), 124 bits, see alignment E=5e-40 PF00990: GGDEF" amino acids 408 to 566 (159 residues), 132.6 bits, see alignment E=3.4e-42 PF00563: EAL" amino acids 587 to 823 (237 residues), 242.8 bits, see alignment E=1e-75

Best Hits

Predicted SEED Role

"diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)" in subsystem Bacterial hemoglobins

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (846 amino acids)

>MPMX19_01476 hypothetical protein (Azospirillum sp. SherDot2)
MNTNIDRYLLAEKAGTEGVWDWDLRSDTLYLSPRFKDFLGLPPGDSSRESNRPNDWLSLV
HPEDVDWLHASFEAQMVGLSVPFQIEHRVRRADASAAAKPHWRWLVCRGMAVMDDSGEPI
RLVGSVADITDRKHAEQELRRSEERYALAAAASNDGLYDWDLVTDRVYYSPRWASLLGLS
PADLTDEPQEWLGRILAADRAILTDAMASLGRAEPESETGAEAAFQVEYRMRNAAGAIRW
MACRGIAVLDAAGKPIRLVGSQADVTDRKTAEQRLRQSEERYALAAAGAADGLWDWHIDS
GEVYYSPRWKAMLGFEEAEIAGSVDEWFNRVLPGDLDGLRTAIGLHLVGERPHLQQEFRI
RGKGGQEMWMLVRGLAVRNDKGFAVRMAGSMTDITARKKAEQQILFNAVHDSMTGLPNRT
LLLDRIGQALDRNRRAGSRPFATIIIDLDRFKAINDALGTSAGDRMLRIVAERLDVSRRV
GDTLARLSADEFAVLVDEMDDAGDALEAAERMARAISRPVTLAEGHDVVLTASIGVALSQ
TGYERAEDMLRDASLAMYRAKSGGRARIDVFDANLRRQAMAAMRMEADLRAALEQGQLCL
HYQPIVLLETGAIAGFEALMRWNHPDRGLVSPLEFIPLAEETGLIAPMGRWALGQAVRQL
AAWQARFPRPVPLFMSVNVSTRQFRDDDIVGAVRDLLDAVPIPPSSLKLELTESLLVQDP
DECRMLMQSLRDMDVRLSIDDFGTGYSSLAYLHKLPVDVLKIDRSFVRAVSTGEGNAAIV
QVIAGLATILRLDCVAEGVETADEAVYLRGLCQYAQGYHFARPALPEAVERLLAAEDEHI
ALPASA