Protein Info for MPMX19_01343 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 503 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 37 to 56 (20 residues), see Phobius details amino acids 68 to 86 (19 residues), see Phobius details amino acids 107 to 136 (30 residues), see Phobius details amino acids 148 to 172 (25 residues), see Phobius details amino acids 184 to 208 (25 residues), see Phobius details amino acids 228 to 254 (27 residues), see Phobius details amino acids 260 to 276 (17 residues), see Phobius details amino acids 293 to 314 (22 residues), see Phobius details amino acids 334 to 362 (29 residues), see Phobius details amino acids 373 to 399 (27 residues), see Phobius details amino acids 426 to 447 (22 residues), see Phobius details PF06808: DctM" amino acids 14 to 450 (437 residues), 331.7 bits, see alignment E=3.1e-103 TIGR00786: TRAP transporter, DctM subunit" amino acids 24 to 452 (429 residues), 313.8 bits, see alignment E=7.5e-98

Best Hits

KEGG orthology group: None (inferred from 95% identity to azl:AZL_012850)

Predicted SEED Role

"TRAP dicarboxylate transporter, DctM subunit, unknown substrate 6"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (503 amino acids)

>MPMX19_01343 hypothetical protein (Azospirillum sp. SherDot2)
MVEFISANMAPVMFGALVLFLLMGFPVAFALAANGLVFGLVGIELGLLTPALMQALPERV
FGIMRNDTLLAIPFFTFMGLILERSGMAEDLLDTIGQLFGPIRGGLAYAVIFVGALLAAT
TGVVAASVISMGLISLPIMLRYGYDRRVASGVIAASGTLAQIIPPSLVLIVLADQLGRSV
GDMYAGALIPGLVLTGLYTGYILLTSIIKPEMVPALPPEARTLRGAQLLLRVITSLVPPL
VLIFLVLGTIFIGIATPTEGGAMGAAGAILLALAKRQLSWNLMRQAMDSTAKLSSFVVFI
LIGSTVFGLVFRAVNGDLWVEHLLIGLPGGELGFLIVCNILVFVLAFFLDFFELAFIIVP
LLGPVADKLGIDLIWFGVLLGVNMQTSFMHPPFGFALFFLRSVAPKMDYIDKVTGRKIGK
ITTGQIYWGAVPFVIIQIIMVGLVIGFPQLVDAGRDKGPVINLNDVKIEIPAFDNQDVAP
PFGAPGQSEQSPADDIMKQLQGK