Protein Info for MPMX19_01272 in Azospirillum sp. SherDot2

Annotation: Putative aliphatic sulfonates transport permease protein SsuC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 64 to 87 (24 residues), see Phobius details amino acids 99 to 118 (20 residues), see Phobius details amino acids 122 to 143 (22 residues), see Phobius details amino acids 155 to 179 (25 residues), see Phobius details amino acids 187 to 206 (20 residues), see Phobius details amino acids 213 to 237 (25 residues), see Phobius details PF00528: BPD_transp_1" amino acids 76 to 242 (167 residues), 52.5 bits, see alignment E=2.7e-18

Best Hits

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 97% identity to azl:AZL_013400)

Predicted SEED Role

"Alkanesulfonates transport system permease protein" in subsystem Alkanesulfonate assimilation or Alkanesulfonates Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (250 amino acids)

>MPMX19_01272 Putative aliphatic sulfonates transport permease protein SsuC (Azospirillum sp. SherDot2)
MKTYNKIALSALGVIVFLLAWEAVARSGVVPARLLPSPSAVPAAFLTEFKSGIWQAMVLA
SLSHYLVGLSLGTFLGVSFGTAAALWGKWDAFQAWVVRMLRPIPAIAWIPFAIIWFGVSE
GAASFLIALTVFWINYYASYAAVRGVDKDLIELGYAFGQGGLIPRLFKIILPGALPGILS
GLRAGLGQGWMTVVAAELFGISGLGMRMMEASGLLATHIVVLYMVTIALLYGVSDFLFMQ
VQSRVLSWQR