Protein Info for MPMX19_01262 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 398 PF07228: SpoIIE" amino acids 200 to 389 (190 residues), 127.2 bits, see alignment E=3.9e-41

Best Hits

KEGG orthology group: None (inferred from 36% identity to azl:AZL_006840)

Predicted SEED Role

"Serine phosphatase RsbU, regulator of sigma subunit" in subsystem SigmaB stress responce regulation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (398 amino acids)

>MPMX19_01262 hypothetical protein (Azospirillum sp. SherDot2)
MSGGPPVVIGHPRPSAAGPLRDVLGRLGVRRLTVVDGDGLVQAAADAAAESPQLLLLHAG
LPGFGPDLLVGLREMAQLRDVPILVLGRFASGSRRAELMRAGATDLLARPLTLAELSARL
SVYLERRRLDRSLQEVIRSLHSYHHGAMQRMALARQMQLGLLPDASACRSLEGRYGIAMD
SHFESSSELGGDLWGARPLDDRRFALFLCDFTGHGVAAALNTFRLHALLARTDLPADDPA
ETLRTLNGLLVGLLPEAQFAAMIYAVVDVGADRLVYATAGAPKPLVRHRDGGLEVGPSCG
LPLGLAGEARYRNHCLDFPPGSTLLLFSDALYEARGWDGEMFGYDGVTDLVRGLGDDELE
RPLGRMLDRYFATVPRLLADDLTVLWISRSVRPRSGPD