Protein Info for MPMX19_01260 in Azospirillum sp. SherDot2

Annotation: Sensor histidine kinase RcsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1120 transmembrane" amino acids 249 to 271 (23 residues), see Phobius details PF22588: dCache_1_like" amino acids 138 to 230 (93 residues), 48.1 bits, see alignment E=4.3e-16 TIGR00229: PAS domain S-box protein" amino acids 282 to 414 (133 residues), 29.3 bits, see alignment E=3.9e-11 PF13188: PAS_8" amino acids 286 to 344 (59 residues), 22 bits, see alignment 4.7e-08 PF00989: PAS" amino acids 287 to 353 (67 residues), 28.2 bits, see alignment 6.6e-10 PF08448: PAS_4" amino acids 296 to 360 (65 residues), 35 bits, see alignment 6e-12 PF00512: HisKA" amino acids 430 to 494 (65 residues), 74.4 bits, see alignment 2.5e-24 PF02518: HATPase_c" amino acids 541 to 668 (128 residues), 98.9 bits, see alignment E=9.8e-32 PF00072: Response_reg" amino acids 689 to 799 (111 residues), 43.5 bits, see alignment E=1.3e-14 amino acids 865 to 977 (113 residues), 97.7 bits, see alignment E=1.9e-31 PF01627: Hpt" amino acids 1028 to 1110 (83 residues), 55 bits, see alignment 3.2e-18

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1120 amino acids)

>MPMX19_01260 Sensor histidine kinase RcsC (Azospirillum sp. SherDot2)
MQSVDVTLSSIVDALSDANWTGEDGAPGPDVTAMLTDRLRRSPHLRGLTLLDRTGRIVAT
TEGAYPAATYLTELDVFRLQAAAQGNGLVIGDPRPGRSLIDRAPAGERSGRWLLPMSRAL
READGTLQAVVVATVNPDYFQGLYRAVQGGTGAGMGDRIALYRYDGTLLTVQPQIGDEIA
KSFAATPLFRHYLPQAEYGVFRHSGTDVGAGPGTRIVAYRTTPVWPLILTVSVRTDTVLA
PWRDNLRMASLLSGGMILLLSLFGLLLARSLAAQREQGKELEETNARLSAIVDTAAEGIV
TARPDGVIEAANPAAHAIFRCAPGELVGRPVVDFLPTDRRSGISRALEEIARGRHAMDLA
TRGEIIALRVAADDAGDRTESFPLAYSMALVKTAAGPLYAAILRDLTEEKRLEHTLRDAK
ERAEDGQRIKMEFLATMSHEIRTPMNGVIGMAGLLLDTPMEAEQRTYAETIRDSAESLLV
IINDILDFSKIDAGRLDLEVGEFELVPMVESVAEILAPRAAAKGLDLASFVPPGLRGPLL
GDAGRLRQILLNLAGNAVKFTDSGSVTILLSEEPDERQEADGPDAGKAEDGVRVRFEVRD
TGIGIPEEERPRLFAMFTQVDSSPARRHGGTGLGLAICKRLAELMGGRIGVDSELGTGSV
FWVSVPLKRGVGSAHPPAPIGNWAGRRLLLVDDIAVNRDLLTRQIDGFGIVVETAESGEQ
ALDRLVAAARLGTPFDAAILDHRMPGLTGPEVARRIRTIPELAGIRLALASSQRLEGQEQ
APVDTHLPKPIRFSTLCQCLARLLERPALSLAGAPAASWPDAAPGSGPAAGNVIPRPIDS
PAAVPPTAAKIDPAPNGQPTPRVRVLVAEDNPVNQQLTLALLRRAGVSAEAVSNGEEAVE
AVTARPYDLVLMDVQMPVMDGLAATRRIRKLSGTAARIPVVALTANAMQGDAAICLEAGM
DDYLSKPINARKLLDTIARFIPPAADGKSDGAGQAASPPKADSGPATVNTEKIEELRDAL
GKDGFALLLETFFGDSPQHLDLLRAAIARGDRTGIEREAHILKGSAANVGFDRMAETAHH
LVDAARRGDLDALTATAGERVADELSAARKAAVALVATDD