Protein Info for MPMX19_01205 in Azospirillum sp. SherDot2

Annotation: High-affinity branched-chain amino acid transport system permease protein LivH

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 296 transmembrane" amino acids 12 to 38 (27 residues), see Phobius details amino acids 44 to 63 (20 residues), see Phobius details amino acids 69 to 88 (20 residues), see Phobius details amino acids 101 to 119 (19 residues), see Phobius details amino acids 150 to 169 (20 residues), see Phobius details amino acids 200 to 221 (22 residues), see Phobius details amino acids 230 to 257 (28 residues), see Phobius details amino acids 267 to 292 (26 residues), see Phobius details PF02653: BPD_transp_2" amino acids 18 to 284 (267 residues), 135.9 bits, see alignment E=7.5e-44

Best Hits

KEGG orthology group: K01997, branched-chain amino acid transport system permease protein (inferred from 96% identity to azl:AZL_014090)

Predicted SEED Role

"High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (296 amino acids)

>MPMX19_01205 High-affinity branched-chain amino acid transport system permease protein LivH (Azospirillum sp. SherDot2)
MMGTIFGIPPQALFGQLLLGLINGSFYALLSLGLAVIFGMLNVINFAHGALYMMGAFVAW
LLMTQLGIGYWWALLLVPLVVGLFGVVLEKTLLSRLYKLDHLYGLLLTFGLALIVEGAFR
HQYGVSGQPYPIPDALKGGQNLGFMFLPNYRGWVVVASLIVCISTWIAIEKTKLGAYLRA
ATENPVLVQAFGINVPRMITLTYAFGVALAGLAGVLAAPIYQVSPLMGSNLIIVVFAVVV
IGGMGSILGAVLTGYGLGLLEGLTKVFYPEASNIVVFVIMAVVLMIKPAGLFGRER