Protein Info for MPMX19_01164 in Azospirillum sp. SherDot2

Annotation: Protein translocase subunit SecD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 532 signal peptide" amino acids 7 to 8 (2 residues), see Phobius details amino acids 25 to 29 (5 residues), see Phobius details transmembrane" amino acids 9 to 24 (16 residues), see Phobius details amino acids 369 to 388 (20 residues), see Phobius details amino acids 395 to 415 (21 residues), see Phobius details amino acids 421 to 441 (21 residues), see Phobius details amino acids 466 to 488 (23 residues), see Phobius details amino acids 494 to 517 (24 residues), see Phobius details PF07549: Sec_GG" amino acids 45 to 64 (20 residues), 22.8 bits, see alignment (E = 1.2e-08) TIGR01129: protein-export membrane protein SecD" amino acids 47 to 518 (472 residues), 476.9 bits, see alignment E=5.9e-147 PF21760: SecD_1st" amino acids 161 to 219 (59 residues), 95 bits, see alignment 3.6e-31 PF22599: SecDF_P1_head" amino acids 235 to 349 (115 residues), 142.8 bits, see alignment E=1.1e-45 TIGR00916: protein-export membrane protein, SecD/SecF family" amino acids 281 to 510 (230 residues), 274.5 bits, see alignment E=7.2e-86 PF02355: SecD_SecF_C" amino acids 352 to 521 (170 residues), 70.3 bits, see alignment E=3.7e-23 PF03176: MMPL" amino acids 374 to 516 (143 residues), 29.2 bits, see alignment E=1.1e-10

Best Hits

KEGG orthology group: K03072, preprotein translocase subunit SecD (inferred from 97% identity to azl:AZL_014530)

Predicted SEED Role

"Protein-export membrane protein SecD (TC 3.A.5.1.1)" (TC 3.A.5.1.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (532 amino acids)

>MPMX19_01164 Protein translocase subunit SecD (Azospirillum sp. SherDot2)
MLYFSRWKIYLILATCIAGFILMLPNFMGRDTLAALPSWYANTRVSLGLDLRGGSHLLLE
VDMATVIRDRVEGLVDGARQQLRTANVGYTALNAGERAVTVQLRDPAQAEEAVKALRQLS
SPVGRTALGGGQPDLDVTVNGGTVTVALSEVALRDRATQAIEQSIEIVRRRIDETGVNEP
TIARQGNDRILVQLPGVEDPDRIKRLLGTTAKMTFRLVDVNADPSTGRAPPGSEILPSTE
GDRYQSKYVIRKKVEVDGATLQNASAGTNPQTGEWVVNFEFNTAGANRFAEVTKQNVGRP
FAIVLDNKVISAPVIREPITGGRGQISGNFTAANANDLSVLLRAGALPAPLKVIEERTVG
PDLGADSIRAGLTAVVVGFVMVCIYMIACYGLFGAFACSALFINLVLTLAALSLLQATLT
LPGIAGVLLSLGLAVDANILINERIREETKKGRGVFASMEAGFSRAYSTIVDSNLTTAIK
MALLFVFGTGTIKGFAVTITFGILISMFTATVLVRLMMVTWLRRTRPAVLPV