Protein Info for MPMX19_01163 in Azospirillum sp. SherDot2

Annotation: Protein translocase subunit SecF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 318 transmembrane" amino acids 20 to 39 (20 residues), see Phobius details amino acids 138 to 159 (22 residues), see Phobius details amino acids 165 to 185 (21 residues), see Phobius details amino acids 191 to 208 (18 residues), see Phobius details amino acids 244 to 263 (20 residues), see Phobius details amino acids 269 to 295 (27 residues), see Phobius details PF07549: Sec_GG" amino acids 35 to 57 (23 residues), 30.6 bits, see alignment (E = 1.7e-11) TIGR00966: protein-export membrane protein SecF" amino acids 41 to 288 (248 residues), 248.5 bits, see alignment E=8.5e-78 TIGR00916: protein-export membrane protein, SecD/SecF family" amino acids 113 to 285 (173 residues), 165.1 bits, see alignment E=2e-52 PF02355: SecD_SecF_C" amino acids 114 to 297 (184 residues), 210.9 bits, see alignment E=1.1e-66

Best Hits

Swiss-Prot: 42% identical to SECF_RICBR: Protein translocase subunit SecF (secF) from Rickettsia bellii (strain RML369-C)

KEGG orthology group: None (inferred from 96% identity to azl:AZL_014540)

Predicted SEED Role

"Protein-export membrane protein SecD (TC 3.A.5.1.1) / Protein-export membrane protein SecF (TC 3.A.5.1.1)" (TC 3.A.5.1.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (318 amino acids)

>MPMX19_01163 Protein translocase subunit SecF (Azospirillum sp. SherDot2)
MFHLRLVPDNTKIPFMNGRIAGLVVSAILSIASIVLFFHPGLNYGIDFRGGIVIEARTPQ
AADFASLRHTLSGLGMGQVALQEFGSPQDVLIRLERQPGDDAAQQVAADKVRNTLAQSIP
GTQVRRVEAVGASVSGELFANGMLALGLAMLAMLVYIWFRFEWQFGFGAVVTLILDITKI
VGFYAITDIQFNLTAVAAILTVMGYSVNDKVVVYDRMRENLRIYKKMPLRDLIDMSINET
LNRTVGTSVCTLLSIIPLALFGGEALQDFGIVLIFGVILATSSSVFIAAPILLFLGENRL
RRGSPDAASAGNTPATTP