Protein Info for MPMX19_01134 in Azospirillum sp. SherDot2

Annotation: Inner membrane transport protein YdhP

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 397 signal peptide" amino acids 1 to 15 (15 residues), see Phobius details transmembrane" amino acids 38 to 59 (22 residues), see Phobius details amino acids 70 to 88 (19 residues), see Phobius details amino acids 95 to 117 (23 residues), see Phobius details amino acids 128 to 150 (23 residues), see Phobius details amino acids 158 to 181 (24 residues), see Phobius details amino acids 202 to 226 (25 residues), see Phobius details amino acids 236 to 255 (20 residues), see Phobius details amino acids 267 to 286 (20 residues), see Phobius details amino acids 292 to 314 (23 residues), see Phobius details amino acids 326 to 348 (23 residues), see Phobius details amino acids 361 to 382 (22 residues), see Phobius details PF07690: MFS_1" amino acids 9 to 345 (337 residues), 148.3 bits, see alignment E=2.8e-47 PF00083: Sugar_tr" amino acids 37 to 169 (133 residues), 39.1 bits, see alignment E=4.6e-14

Best Hits

Swiss-Prot: 57% identical to YTBD_BACSU: Uncharacterized MFS-type transporter YtbD (ytbD) from Bacillus subtilis (strain 168)

KEGG orthology group: None (inferred from 95% identity to azl:AZL_014640)

Predicted SEED Role

"Putative drug efflux protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (397 amino acids)

>MPMX19_01134 Inner membrane transport protein YdhP (Azospirillum sp. SherDot2)
MPLALLALAISAYAIGTTEFVIVGLLPTVASDLDVSLPLAGMVVSVYALGVTFGAPILTA
LTGRVPRKPLLLGLMGVFVAGNLLAGISPNYETLLVARVLSAFAHGVFFSVGSTIAADLV
PEDRRASAIAMMFSGLTIAIVTGVPLGTWIGQTFGWRATFLAVSALGVVGGLGVAALVPA
RLSQPPAAGLGTQLGVLAKPRLLLAFAITALGYGGTFVAFTFLAPILETITGFSNSTVSL
VLILYGAAIAVGNVVGGRLANRRPVRALAWLFALQALVLIVFTFTADAKVPALVTLAGMG
ALAFANVPGLQLYVVQLAQRHAPEAVDVASALNIAAFNLGIAAGAFFGGQVVSSPLGLGA
TPWVGGLFVLGGLVLTLASGALDRRETDRRTTVPAAC