Protein Info for MPMX19_01109 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 276 transmembrane" amino acids 6 to 23 (18 residues), see Phobius details amino acids 35 to 55 (21 residues), see Phobius details amino acids 67 to 86 (20 residues), see Phobius details amino acids 93 to 110 (18 residues), see Phobius details amino acids 130 to 154 (25 residues), see Phobius details amino acids 184 to 205 (22 residues), see Phobius details amino acids 217 to 235 (19 residues), see Phobius details amino acids 248 to 270 (23 residues), see Phobius details PF01578: Cytochrom_C_asm" amino acids 67 to 269 (203 residues), 51.3 bits, see alignment E=6.2e-18

Best Hits

Swiss-Prot: 71% identical to YNR3_AZOBR: Uncharacterized 28.8 kDa protein in nifR3-like 5'region from Azospirillum brasilense

KEGG orthology group: None (inferred from 96% identity to azl:AZL_015100)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (276 amino acids)

>MPMX19_01109 hypothetical protein (Azospirillum sp. SherDot2)
MSQNIFLSLTALVALVPAALYPYRRIAGQGVEGRGWAFWGALLLAAAGPGMWAILQVAGQ
WQTGFSTALWVTTAACMALFIGLSLFHATAWRLAPLLLPYLLVVCLLATLTEDAPAPILR
GNAPGVWIDLHIAVSVFTYALLTLSAVSSFAAVIQTRALKSKRPTPLSRFLPPVAESERL
QLRLLIASEVVLGAGLATGMAVLYFEQGLLFRTDHKSLLSLATFIVIGILLLAEYRTGVR
GRTAARTMLIVYLLATLAYPGVKFVSNVLIGQWTWS