Protein Info for MPMX19_00969 in Azospirillum sp. SherDot2

Annotation: Putative aliphatic sulfonates-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 342 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF13379: NMT1_2" amino acids 29 to 263 (235 residues), 75.6 bits, see alignment E=1.5e-24 PF09084: NMT1" amino acids 45 to 251 (207 residues), 94.1 bits, see alignment E=3e-30 PF04069: OpuAC" amino acids 57 to 250 (194 residues), 28.3 bits, see alignment E=3.5e-10 PF12974: Phosphonate-bd" amino acids 73 to 211 (139 residues), 35.3 bits, see alignment E=2e-12 PF16868: NMT1_3" amino acids 85 to 198 (114 residues), 34.3 bits, see alignment E=5.2e-12

Best Hits

KEGG orthology group: K02051, sulfonate/nitrate/taurine transport system substrate-binding protein (inferred from 94% identity to azl:AZL_016440)

Predicted SEED Role

"Hydroxymethylpyrimidine ABC transporter, substrate-binding component" in subsystem Thiamin biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (342 amino acids)

>MPMX19_00969 Putative aliphatic sulfonates-binding protein (Azospirillum sp. SherDot2)
MTLKSLIAAAAVALTLGTSGLAAAQGKLEKTDIKIAVGGKPLLYYLPLTLAERLGYFKDA
GLNVEVSDFGGGAKSLQALVGGSADVVTGAYDHTIQMQAKGQPIVAVTQLGRYPGIVLAS
VNKSGTVKSVQDLKGKKVGVTAPGSSTNFMLNHVLTSLGLKPEDASVIGVGGGPSAIAAI
KRGEIDAIVNLDPVISQAQADGDITILADTRTEKGTMDVYGGPYPAAVLYMKPDFIKENP
KTTQALADVFVRTMLWLNKASTDDVLKVLPEEYFLGNKSLYAQAFEHSKPTYSPDGRFTQ
EGADAALKVLKAFDPAVASASIDLSKTYTNQYVEDALKRLQK