Protein Info for MPMX19_00876 in Azospirillum sp. SherDot2

Annotation: Transcription-repair-coupling factor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1213 PF17757: UvrB_inter" amino acids 141 to 225 (85 residues), 75.6 bits, see alignment 9.6e-25 TIGR00580: transcription-repair coupling factor" amino acids 155 to 1101 (947 residues), 1039.9 bits, see alignment E=0 PF02559: CarD_TRCF_RID" amino acids 498 to 553 (56 residues), 70.3 bits, see alignment 4e-23 PF00270: DEAD" amino acids 622 to 784 (163 residues), 83.4 bits, see alignment E=5.7e-27 PF04851: ResIII" amino acids 624 to 778 (155 residues), 32.1 bits, see alignment E=3.6e-11 PF00271: Helicase_C" amino acids 822 to 926 (105 residues), 72.2 bits, see alignment E=1.5e-23 PF03461: TRCF" amino acids 1030 to 1122 (93 residues), 92 bits, see alignment 8.7e-30

Best Hits

Predicted SEED Role

"Transcription-repair coupling factor" in subsystem DNA-replication or Transcription factors bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1213 amino acids)

>MPMX19_00876 Transcription-repair-coupling factor (Azospirillum sp. SherDot2)
MVSYDLQPGRAGRLLIGGAPEGHDARILAELAQKAGGYGLLHVALDDTRCALLAEALAFF
APKLEVLTFPAWDCLPYDRVSPNGGIVARRIDTLTRLIARRDAASNRDGLAPLIVLTTVN
AVVQKVPPRSAFKNAVFSAKLRDRIDLEKLQRYLAGNGYTRAQTVREPGEFAVRGGIVDL
FPPGTEEPLRLDLFGDELEGVRAFDPMTQRTTDKRDSVELKPMSEVFLDDAGIARFRSGY
RELFGAVTDDDPLYEAISAGRSYGGMEHWLPLFHESMDTVLDYLPRGIVSLDHQANEARD
ARIAQVVDFHASRDGMMTIEKRAGSPVYKPVPVASMFLDGIGWDALLAERAVAQLQIFST
PPGIKGTVDAGGKRGHDFAEERNRPDVNVFDAVKDHIRALRADGRRVLIAGYSAGSRDRL
SNVLADHGIPGLEPAESMEDVRRFDRGIIGTIVLGMEHGFTSADLAVITEQDILGDRLVR
PAKKKRKAANFIAEHSALHEGDIVVHMDHGIGRYDGLETLDVTGAPHDCLRLIYEGGDKL
YVPVENIEVLSRYGSEDANVQLDKLGGAGWQGRKARVKKRLKDMAEALLKIAAERMLKKA
DPVLTPEGVYQEFAARFPYPETDDQLKAIEDIFTDLGSGRPMDRLVCGDVGFGKTEVALR
AAFMVAMSGKQVAVVVPTTLLARQHFRTFSTRFNGLPVRVVQLSRMVTAREQTLVKKELA
EGTADIVVGTHALLAKGLDFKRLGMVIVDEEQHFGVKQKERLKELRADIHVLTLTATPIP
RTLQMALSGVRELSLIATPPVDRLAVRTFVLPYDPVVIREAILREHYRGGQSFYVCPRVE
DLAKVAERVRELVPEVKIVTAHGQMPASELEDVMTAFDEGKFEVLLATNIIESGLDIPNA
NTLIVHRADLFGLAQLYQIRGRVGRSKKRGYAYLTYAPNKPLSGTAQQRLHVIETLDSLG
AGFQLASHDMDIRGAGNLLGEEQSGQVREVGVELYQQMLEEAVASARASMQEGAVAAAAA
QEWVPQINLGTPVLIPESYVPDLTVRLSLYRRIADLVDRAEVDGFAAELIDRFGKLPEEV
ENLLDVVTIKRWCKQANIDRVDAGPKGLVLAFHDNFYAEPAKLLTYIAQHLTLMKLRPDH
KLVYIREWPDPAARVRSVQKLVKDLAEMASGGGVPRGETPPPPPPPPPPKPTGAKIASRF
GTPSRFGRPTGRR