Protein Info for MPMX19_00858 in Azospirillum sp. SherDot2

Annotation: Flagellar biosynthetic protein FliP

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 262 signal peptide" amino acids 1 to 40 (40 residues), see Phobius details transmembrane" amino acids 63 to 90 (28 residues), see Phobius details amino acids 102 to 121 (20 residues), see Phobius details amino acids 201 to 223 (23 residues), see Phobius details amino acids 233 to 256 (24 residues), see Phobius details PF00813: FliP" amino acids 63 to 255 (193 residues), 273 bits, see alignment E=7.9e-86 TIGR01103: flagellar biosynthetic protein FliP" amino acids 63 to 259 (197 residues), 297.9 bits, see alignment E=1.8e-93

Best Hits

Swiss-Prot: 56% identical to FLIP_CAUVC: Flagellar biosynthetic protein FliP (fliP) from Caulobacter vibrioides (strain ATCC 19089 / CB15)

KEGG orthology group: K02419, flagellar biosynthetic protein FliP (inferred from 92% identity to azl:AZL_012030)

Predicted SEED Role

"Flagellar biosynthesis protein FliP" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (262 amino acids)

>MPMX19_00858 Flagellar biosynthetic protein FliP (Azospirillum sp. SherDot2)
MRRGILRRLRACWKPAAAGLALALAVGVALGLSAGPALAQSLTFDLGDAGGTATGRIVQT
IGLITVLSLAPSILIMMTAFTRIVIVLSFLRNALGVQQVPPTTVMMSLALFLTFFVMAPV
FERSYTQGIQPLMNQEIDEMEAFRRTMAPLRDFMLHHTAEKDLRLFMDMARIQSVPEAND
MPLHVLVPAFMISEIKRGFEIGFLLFLPFLIIDMVVSSILMSMGMMMLPPTMVAIPFKII
FFVLVDGWYLIAGSLARSFGTL