Protein Info for MPMX19_00796 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 362 transmembrane" amino acids 33 to 54 (22 residues), see Phobius details amino acids 60 to 78 (19 residues), see Phobius details amino acids 89 to 111 (23 residues), see Phobius details amino acids 156 to 179 (24 residues), see Phobius details amino acids 214 to 237 (24 residues), see Phobius details amino acids 242 to 272 (31 residues), see Phobius details amino acids 278 to 298 (21 residues), see Phobius details amino acids 315 to 346 (32 residues), see Phobius details PF01594: AI-2E_transport" amino acids 150 to 343 (194 residues), 139.1 bits, see alignment E=1e-44

Best Hits

KEGG orthology group: None (inferred from 86% identity to azl:AZL_010840)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (362 amino acids)

>MPMX19_00796 hypothetical protein (Azospirillum sp. SherDot2)
MATPSRPTAYPTTTPGGGAAQTEPPARAGRGELAVFTWKVLIVAGVAALSIFLWRISGTL
LLIFTGVLFAILLQRLTGYVQRATGLGHGWSLAIVLLTLVLLVGGGGWLMGTSMAAQLGQ
LQEQVTKAMGMLPDGWRDRIMEQGKEWPWMNQLSSFASGLVYVVGDAVVVMFAALYLAAS
PGLYQRGVVLLVPPRGQKRACEVMDVAGDSLWKWLIGQLVAMAAVGTMIAVGLWLLGIPS
ALALGIVAGLMEFIPLVGPFLAAVPALLIGFAQSPQDALWVAGLYLVIQQIEGNVITPLL
QKRVVDLPPVVTISAIAAGGVLFGIMGMFLATPLAVVVLVLVNLLYIEDKLGQPRHFPSD
HS