Protein Info for MPMX19_00785 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 827 transmembrane" amino acids 168 to 189 (22 residues), see Phobius details amino acids 348 to 372 (25 residues), see Phobius details PF13188: PAS_8" amino acids 14 to 64 (51 residues), 23.3 bits, see alignment 2.1e-08 PF13426: PAS_9" amino acids 16 to 114 (99 residues), 43.4 bits, see alignment E=1.6e-14 PF00989: PAS" amino acids 24 to 112 (89 residues), 37 bits, see alignment E=1.4e-12 TIGR00229: PAS domain S-box protein" amino acids 24 to 114 (91 residues), 47.7 bits, see alignment E=8.3e-17 PF08447: PAS_3" amino acids 31 to 114 (84 residues), 55.2 bits, see alignment E=3.3e-18 PF02203: TarH" amino acids 163 to 334 (172 residues), 98.1 bits, see alignment E=2.7e-31 PF12729: 4HB_MCP_1" amino acids 163 to 340 (178 residues), 93.3 bits, see alignment E=6.2e-30 PF00015: MCPsignal" amino acids 535 to 682 (148 residues), 109.4 bits, see alignment E=8.4e-35

Best Hits

KEGG orthology group: None (inferred from 85% identity to azl:AZL_010760)

Predicted SEED Role

"Aerotaxis sensor receptor protein" in subsystem Bacterial Chemotaxis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (827 amino acids)

>MPMX19_00785 hypothetical protein (Azospirillum sp. SherDot2)
MRLNEPITDREIVMEDGVLLVSRTDTGGRITFVNKAFVDISGYAESELIGAPHNLIRHPH
MPKEAFADLWATIKDGRPWEGLVKNRTRDGDFYWVRANVTPVIENGAVTGFISIRTKPSR
DQVAAAERLYSDIREGRARHLTVRDGQAVGRGAGAGFRRWMTTVTGRLTLIFAFMILSML
AVGGVTLRGMSDSNASLKMVYEHRTVPAVQIGEILDHMRDNVQTLQRLIIDTRDGTDPKA
MAQREDRIAGNAATIDRLWADYLTTFMTPEETILADRFARQRAAFLNEGLKPAMELARQG
DSLRLEVLVRDRIDPLFQAAFQTNKDLLQLQLTVAKGDYEGALEDFRWHLVFAVAAGLAV
LLGAVFCGLLLLRTVCRPLAAFSVDFDAIARNDQTHTIDLPAAAEFHPIAGQLRGLKARL
CYAVQERVERARHADEERRRALETMASTVEREAGRAVEEVAQRTGAMADDAEGMSGSAER
VSVNAQTVASAAGQALANAQTVAAASEELAASIREISSQVAHSSAVTRRAVESGHHTQAT
IRSLSETVAKVGEVVNLIQSIAGQTNLLALNATIEAARAGEAGKGFAVVAQEVKNLANQT
ASSTEEITRQITAIQAVTDEAVQAVEEIGRTIAEIDHIAGSIAAAMEQQSAATQEISRNV
VETSTAAQEVSYRIAAVSEEADRTGEQATHVKNGSGDVARSIESLRQVLVRIVRTSTGDA
DRRRKPRFQVDETGTLLIGGDRLAVTVRNLSIGGAMIDPVTTTDGRSLAGAIGHLRLDRY
AAEVAVVVKAVEHSRIHLAFDAEKMAGDFARAVEIATKDRSPVDVAA