Protein Info for MPMX19_00712 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 157 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF05433: Rick_17kDa_Anti" amino acids 29 to 69 (41 residues), 37.6 bits, see alignment E=1.7e-13 PF16998: 17kDa_Anti_2" amino acids 75 to 153 (79 residues), 41.3 bits, see alignment E=1.2e-14

Best Hits

Swiss-Prot: 45% identical to 17KD_RICBE: 17 kDa surface antigen (omp) from Rickettsia bellii

KEGG orthology group: None (inferred from 94% identity to azl:AZL_009940)

Predicted SEED Role

"Rickettsia 17 kDa surface antigen"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (157 amino acids)

>MPMX19_00712 hypothetical protein (Azospirillum sp. SherDot2)
MFVKKVVPAVIVVGLLAGCQTGGQKETVGTVGGAVAGGLIGSQIGGGTGKLVATGVGTLL
GAFIGKEIGGSLDKADAGYAETAARQAYAAPVGDRINWNNPQSGNSGTIVTTRDGYSNTG
TYCREFQQTIVVKGRTEQAYGTACKQADGTWKIIGNS