Protein Info for MPMX19_00688 in Azospirillum sp. SherDot2

Annotation: Methyl-accepting chemotaxis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 562 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 189 to 211 (23 residues), see Phobius details PF08269: dCache_2" amino acids 36 to 187 (152 residues), 123.6 bits, see alignment E=1.8e-39 PF17200: sCache_2" amino acids 40 to 190 (151 residues), 132 bits, see alignment E=3.8e-42 PF00672: HAMP" amino acids 210 to 260 (51 residues), 45.6 bits, see alignment 1.4e-15 PF00015: MCPsignal" amino acids 365 to 526 (162 residues), 101.7 bits, see alignment E=8.6e-33

Best Hits

KEGG orthology group: K03406, methyl-accepting chemotaxis protein (inferred from 76% identity to azl:AZL_009690)

Predicted SEED Role

"Methyl-accepting chemotaxis protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (562 amino acids)

>MPMX19_00688 Methyl-accepting chemotaxis protein (Azospirillum sp. SherDot2)
MSGPKMTLRAKLWALVALAGAVSIAIAAAALWLDQRNMLEERKETLRSVVHTAHGLATGY
EAEVKAGRLTREQAFERFKANLNTMFYNGKDYIFVQNLNYQTVIHPVRPDVIGKDQRDNK
DSNGVFFVRALVDTARTKGDGFVEYMYPKPNTEVPLPKLSYVKMFEPWQLLIGTGVYIDD
LDARFTSSLWTMAVVVGGLALPVVALIALVGNSISRRIRRLSDSMRSLADGNLSTVIPET
DSGDELGDMGRAVQVFRVNAEDSRRLEAEQAEANRQAEAEKRQSMDRLAARFEGTVGGMI
RSVSTTTEALGQKVRAMSQAAEQTSQLAGIVASASDDTAANVQTVAAASEELTGSIVEIG
RQVSEASRVAGEAVGMAQEATGRISSLAEAVERIGTVVGLINSIAGQTNLLALNATIEAA
RAGEAGKGFAVVASEVKALANQTAKATDEIGGQMSGIQTVTGQAVTEIQKVAAVIERLSG
IATAISAAVEQQNAATAEITRSVQQAAAGTGEVSSSISGVTAASDESGRTARELVDALGK
LTSEAAGLNAQVGDFLATVRAA