Protein Info for MPMX19_00604 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 357 transmembrane" amino acids 261 to 285 (25 residues), see Phobius details amino acids 297 to 319 (23 residues), see Phobius details PF13641: Glyco_tranf_2_3" amino acids 35 to 143 (109 residues), 39.7 bits, see alignment E=6e-14 PF00535: Glycos_transf_2" amino acids 39 to 190 (152 residues), 51.7 bits, see alignment E=1e-17

Best Hits

KEGG orthology group: None (inferred from 92% identity to azl:AZL_008870)

Predicted SEED Role

"RfbJ protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (357 amino acids)

>MPMX19_00604 hypothetical protein (Azospirillum sp. SherDot2)
MTVSTLGRPADHPAFTPDAGASGTPSAAAAVGPAPTIAVLIPCYNEEAAIGKVVQDFRAA
LPDAIVYVYDNNSKDRTVEVARAAGAVVRSEPLQGKGNVMRRMFADIEADVYVLVDGDDT
YHAASAPELVSRLWDEQLDMVNGARVTEIVAAYRPGHRFGNLVLTGMVAKIFGSRIGDML
SGYRVFSRRFVKSFPALASGFETETELTVHALELRMPIAEVKTPYKDRPPGSHSKLNTIR
DGIRILRTIIILVKEERPLPFFSAAFGLLALLSVILGVPVIATYFQTGLVPRFPTALLAT
GLMLLAFLSLTCGLILDTVTHGRREAKRMSYLSLRAPGHHRPLAAERGAGTCEDGRR