Protein Info for MPMX19_00532 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 568 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 196 to 220 (25 residues), see Phobius details PF12729: 4HB_MCP_1" amino acids 7 to 187 (181 residues), 61.7 bits, see alignment E=1.1e-20 PF00672: HAMP" amino acids 220 to 264 (45 residues), 43 bits, see alignment 6.9e-15 PF00015: MCPsignal" amino acids 370 to 531 (162 residues), 113.1 bits, see alignment E=2.1e-36

Best Hits

KEGG orthology group: K03406, methyl-accepting chemotaxis protein (inferred from 92% identity to azl:AZL_007150)

Predicted SEED Role

"Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)" in subsystem Bacterial Chemotaxis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (568 amino acids)

>MPMX19_00532 hypothetical protein (Azospirillum sp. SherDot2)
MFPPRHATIRTRLFLGFGVVLVLLISLTVIGVREVRKIDSDLTRINEVNSVKQRYAINFR
GSVHDRAIALRDVVLTTDPATLSLVLADIDRLAAFYEDSAKPLDAMFAGMTDIEPEERQL
LASIKEIEAKSLPAIKTVITARKANDMAAAQKGLMQDARPAFTEWLKRINAFIDLQEHKN
QTIAARARDVAKGFQTLMLSLCGAALLMAGAFGLWTVAALRPLRRLTNAMLTLARGDLTV
TVPASDSKDEIGQITGAVEVFKANAVEADAFRRRQAEAEHAAEERKRAEMAALADRFENE
VKGVVDSVASSSTEVRALAKSLATTADHTETQATTVAAASEQASVNVQTVAAAAEELAAS
ISEIGRQIGESSRKAKQAADQADGTNRIVDGLSSKANQIGDVVNLINSIAGQTNLLALNA
TIEAARAGEAGKGFAVVASEVKSLANQTAKATGDISQQIAEIQTATADAVEAIQSIAATI
GEVNVIVGTIAQAVDGQNAATMEIARNVQQAAAGTNEVSSSIGGVLQAASETGSGASRLL
SSSGELSKQAELLHTQVDRFLGSVRGKV