Protein Info for MPMX19_00514 in Azospirillum sp. SherDot2

Annotation: Sensor histidine kinase RcsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 761 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 348 to 368 (21 residues), see Phobius details PF03924: CHASE" amino acids 79 to 259 (181 residues), 65.4 bits, see alignment E=1.2e-21 TIGR00229: PAS domain S-box protein" amino acids 392 to 513 (122 residues), 29.6 bits, see alignment E=3.2e-11 PF08448: PAS_4" amino acids 427 to 507 (81 residues), 41.2 bits, see alignment E=3.5e-14 PF00512: HisKA" amino acids 526 to 589 (64 residues), 32.3 bits, see alignment E=1.7e-11 PF02518: HATPase_c" amino acids 636 to 749 (114 residues), 83.2 bits, see alignment E=3.6e-27

Best Hits

KEGG orthology group: None (inferred from 77% identity to azl:AZL_006970)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (761 amino acids)

>MPMX19_00514 Sensor histidine kinase RcsC (Azospirillum sp. SherDot2)
MNRRYREGGRTGKLAVIVIAGMFLSFSAFLMIRSATRGAELALADRQAIQLHDQLKSDFE
DQSVLLRALSGPMAGPAPVTEASFASAVEPLLPLYPNLHAVAWARRIAERDVPLLERAMR
AAGHGSFAVRTAGGGGSAESDGGAGDSSAGQLAAARFVTVLAEPRSAAGLVGLDMATLPG
QRDVLARSCTANRIVAAGGEPLRYELGRRSVLIYLPVYSREVDPDDGRPYAGGRLVCDVL
TGFLWTSFDVGQLLRDSVRRVGLSVGDAYLLEPPGQTTSGPSRLLAAEGAIGRPGELPHP
PVDALTVEQLTGPAAPYAIVRDIAYGGRVWRLHVVPSPARLFSVEDRLAWTMLIGGLLLT
AGGAAYVLREGRTRRLLQTEARARAAMARALRESEERFRMALRYSKVTLFSQDRDLRHLW
IYCPRMDLNPERMIGRTDGDLFPPEEAARTVALKRSVMESGVGTRCELELTYCGSRRVLD
LSVEPMRDETGAVAGVICAAIDVTESADIREALARAHAEAERANQAKSRFLAAASHDLRQ
PFQAMSLFHHILMSKLDDPHQVEVANKLGEALTAGNTLLSTLLDTSALEVGNVKPRVVEF
DVQDILSRLAVEIGDQAIDRGLLLRMVSCSVRVKSDPILLERMVRNLLVNALRYTTEGRI
LLGCRRRSTADGGMRLSIEVWDTGPGIAEAEMAAIFEDFYRCGTDQRDSGRGLGLGLSIV
RRMAEMLDHPVTVRSRVGRGTMFAVSIPVVAQQCSCCAAAD