Protein Info for MPMX19_00512 in Azospirillum sp. SherDot2

Annotation: Sensor histidine kinase RcsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 536 PF12860: PAS_7" amino acids 153 to 266 (114 residues), 39.3 bits, see alignment E=9.6e-14 PF00512: HisKA" amino acids 289 to 358 (70 residues), 65.8 bits, see alignment E=4.3e-22 PF02518: HATPase_c" amino acids 404 to 516 (113 residues), 92.3 bits, see alignment E=4.1e-30

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (536 amino acids)

>MPMX19_00512 Sensor histidine kinase RcsC (Azospirillum sp. SherDot2)
MDCDTQTCADAGRGGTAAGELPPADPLRLAMLHLPDAVALLKAHHDCTGALTDLEWLSAN
PAAERLMGIAPLTGRRLRGGGIDAACPGLFAALADALHGPVERTVAARHGTTPVRWRVSA
GPVAGGLCAVLTDLGPEAPTVAEALAESLTAALEHSAESFALFDHEDRLVHANGRLKRDL
PDVADRLVPGVSFEELANRFALTDPRLTTDEERRAWVAVRLERHRRLEPPVVVPLPDGRW
LLSREHAVPGGVLVHYTDVTTLKLNEERLRIREAEARTARAEAESASRAKSAFLAQMSHE
LRTPLNAVLGFSEMLLSEAFGPLGNPRYRSYAGDIRDAGTHLLALIDDILELSRLDGGGM
PMAEEGVDLDMLSLRVVSALQEVAKEGDVHLRREVPADLPLLQGDAQALTQMLTNLLSNA
VTHTRPGGEVMLTAHLMPDGGIGLMVADTGVGIPSAELPRILHPFEPPDSTIARNSRGTG
LGLPIVKRLVEMHGGRMELTSQPGVGTAVVLVFPADRSLPRDRCRPAPLPPVILPS