Protein Info for MPMX19_00497 in Azospirillum sp. SherDot2

Annotation: Sensor histidine kinase RcsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 887 PF00512: HisKA" amino acids 201 to 266 (66 residues), 75.8 bits, see alignment 4.4e-25 PF02518: HATPase_c" amino acids 313 to 429 (117 residues), 99.5 bits, see alignment E=3.2e-32 PF00072: Response_reg" amino acids 623 to 736 (114 residues), 75.3 bits, see alignment E=8.5e-25 PF01627: Hpt" amino acids 790 to 866 (77 residues), 43 bits, see alignment E=9e-15

Best Hits

KEGG orthology group: None (inferred from 84% identity to azl:AZL_006800)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (887 amino acids)

>MPMX19_00497 Sensor histidine kinase RcsC (Azospirillum sp. SherDot2)
MSTGAYDDDEILFADEEADGAPPDPGEAATGAEPIDPAAPPWVILVVDDESDVHSMTGLL
LADVAFQRRRLDLVSCFTAADARTVLESRHDIAVILLDVVMEEDDSGLKLVRWIRDGLGN
RDVRIILRTGQPGQAPQRDVIVDYDINDYKPKADLSAESLFTAVIAALRAFDQIQSIETR
VAERTRELRESREQAEEATKAKSAFLATMSHEIRTPMNGVLGMLGLLERTELDDHQRDTV
GTMRESANALLRIIDDILDFSKIEAGKMDLERVALSVPALVEGVAETLAPAAGAKGLALL
TYVDPAIPQALLGDPVRLRQILFNLAGNAIKFTEAGRVVLRAELESPPTGTETLLRIAVC
DTGIGIAEATRQRLFQPFTQAESSTTRRFGGTGLGLSISRRLAALMGGEIGVESEAGLGS
TFWLRLPLASTAAPVSAKDGPDAVDLDGLTVLLGVPDDTERGFLARYLEQAGARVLPAAS
PPELAAQARIAREAGCAVGVVTIDEALHVPAAACAPEELGRRSGEARPPVVLLCHETGGM
PGPSSHPATRGAEAGTVVLSRPLRRLVLLRAVAVAAGRLRLQPVPPQPHPQSSALPPALP
APATARTAAAPGVDEAEAQGRLILVAEDNPVNRKVLLMQLQALGYAAEMAPGGAEALEAL
DAMRRGRRRFALLLTDVQMPEIDGFELTRRIRGDEPSADRLPIVAITANAAPADIERYRA
AGMDDVLSKPLELSQLGVTLAHWMPPVSAASAEVPARALPQPTPEARLGEWIELAGLRAL
CGGDAEMLAELLGDFIAIGRGVVADLDKALDIGDRDRMRACAHNLKGSSRNAGAKPLAEA
ARVLEQSASEGAPLPRLTEEAGRLRDSFAATCTAIERELALTEWSTA