Protein Info for MPMX19_00486 in Azospirillum sp. SherDot2

Annotation: sn-glycerol-3-phosphate import ATP-binding protein UgpC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 358 PF00005: ABC_tran" amino acids 20 to 161 (142 residues), 108.8 bits, see alignment E=5.2e-35 PF17912: OB_MalK" amino acids 235 to 284 (50 residues), 52.6 bits, see alignment 1e-17 PF08402: TOBE_2" amino acids 277 to 349 (73 residues), 41.1 bits, see alignment E=2.3e-14

Best Hits

Swiss-Prot: 63% identical to UGPC_BORA1: sn-glycerol-3-phosphate import ATP-binding protein UgpC (ugpC) from Bordetella avium (strain 197N)

KEGG orthology group: K05816, sn-glycerol 3-phosphate transport system ATP-binding protein [EC: 3.6.3.20] (inferred from 92% identity to azl:AZL_006710)

MetaCyc: 56% identical to ABC-type 3-(6-sulfo-alpha-D-quinovosyl)-sn-glycerol transporter ATP-binding subunit (Agrobacterium fabrum)
7.5.2.M1 [EC: 7.5.2.M1]

Predicted SEED Role

"Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3)" in subsystem Glycerol and Glycerol-3-phosphate Uptake and Utilization (TC 3.A.1.1.3)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.6.3.20 or 7.5.2.M1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (358 amino acids)

>MPMX19_00486 sn-glycerol-3-phosphate import ATP-binding protein UgpC (Azospirillum sp. SherDot2)
MATVEIRNVRKSYGPVEAIKGIDIAIQDGEFLVLLGPSGCGKSTLLRMVAGLEGITGGEI
AIGGRVVNHLDPKDRDIAMVFQNYALYPHMTVFDNMAYGLKIRGIPKAEIRARVDKAANI
LELGRFLDRRPSQLSGGQRQRVAMGRAIVREPAAFLFDEPLSNLDAKLRTQMRVEIKRLQ
DRLGITSLYVTHDQVEAMTLADRILVMNHGVAEQIGTPLEVYQRPASLFVAGFIGSPPMN
VLDGRIDDRGEAVLLPGGQRLALPQARPTDAGRPVKLGIRPEHMAVAAEGFSGGFSIEIE
LVEALGADTVVYGRLPDGESLLVRMAGIPTVRERDRLTVTPQDGALHLFDAVTGRRME