Protein Info for MPMX19_00484 in Azospirillum sp. SherDot2

Annotation: sn-glycerol-3-phosphate transport system permease protein UgpA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 305 transmembrane" amino acids 22 to 43 (22 residues), see Phobius details amino acids 85 to 107 (23 residues), see Phobius details amino acids 119 to 139 (21 residues), see Phobius details amino acids 168 to 192 (25 residues), see Phobius details amino acids 214 to 238 (25 residues), see Phobius details amino acids 278 to 298 (21 residues), see Phobius details PF00528: BPD_transp_1" amino acids 100 to 302 (203 residues), 51.7 bits, see alignment E=4.5e-18

Best Hits

Swiss-Prot: 65% identical to UGPA_BRUA2: sn-glycerol-3-phosphate transport system permease protein UgpA (ugpA) from Brucella abortus (strain 2308)

KEGG orthology group: K05814, sn-glycerol 3-phosphate transport system permease protein (inferred from 95% identity to azl:AZL_006690)

MetaCyc: 53% identical to sn-glycerol 3-phosphate ABC transporter membrane subunit UgpA (Escherichia coli K-12 substr. MG1655)
ABC-34-RXN [EC: 7.6.2.10]; 7.6.2.10 [EC: 7.6.2.10]

Predicted SEED Role

"Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3)" in subsystem Glycerol and Glycerol-3-phosphate Uptake and Utilization (TC 3.A.1.1.3)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.6.2.10

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (305 amino acids)

>MPMX19_00484 sn-glycerol-3-phosphate transport system permease protein UgpA (Azospirillum sp. SherDot2)
MRCLPFTKDHPLQRRVTFDNRLLPYLLLAPQVAVTLVFFIWPAANAIWQSVHLQDAFGIR
SEFVWFENFTNVLGDPNYLDTLKVTVVFSLAVTVLAMGLALLLAVLADSKIKGARAYKTM
LIWPYALAPAVAAVLWMFIFNPDIGSFGRALRALGYDWDYRLNGGQALTMVIMAASWKQV
SYNFIFFLAGLQAIPRSVMEAASIDGAGPVRRFWTITFPLLSPTTFFLLVVDMVYAFFET
FGTIHALTQGGPGKATETLIFRVYQDGVVNNDLGGSSAQSVILMVIVIALTAVQFRFVER
KVHYS