Protein Info for MPMX19_00480 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1090 transmembrane" amino acids 22 to 46 (25 residues), see Phobius details amino acids 327 to 346 (20 residues), see Phobius details amino acids 367 to 393 (27 residues), see Phobius details PF08269: dCache_2" amino acids 52 to 349 (298 residues), 213.1 bits, see alignment E=2.3e-66 PF17200: sCache_2" amino acids 94 to 238 (145 residues), 75.3 bits, see alignment E=2.4e-24 amino acids 244 to 354 (111 residues), 58.8 bits, see alignment E=2.9e-19 PF17201: Cache_3-Cache_2" amino acids 120 to 236 (117 residues), 31.1 bits, see alignment E=7.2e-11 amino acids 248 to 350 (103 residues), 28.3 bits, see alignment E=4.9e-10 PF13426: PAS_9" amino acids 435 to 519 (85 residues), 20.8 bits, see alignment 1.7e-07 amino acids 539 to 641 (103 residues), 61.5 bits, see alignment E=3.8e-20 TIGR00229: PAS domain S-box protein" amino acids 471 to 526 (56 residues), 33.7 bits, see alignment 3.6e-12 amino acids 532 to 648 (117 residues), 59.6 bits, see alignment E=3.3e-20 PF13188: PAS_8" amino acids 531 to 574 (44 residues), 28.7 bits, see alignment (E = 4.2e-10) PF00989: PAS" amino acids 533 to 639 (107 residues), 38.3 bits, see alignment E=5.6e-13 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 650 to 812 (163 residues), 142.1 bits, see alignment E=1.4e-45 PF00990: GGDEF" amino acids 653 to 808 (156 residues), 159.6 bits, see alignment E=2.5e-50 PF00563: EAL" amino acids 831 to 1064 (234 residues), 243.2 bits, see alignment E=1.1e-75

Best Hits

KEGG orthology group: None (inferred from 88% identity to azl:AZL_006650)

Predicted SEED Role

"diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)" in subsystem Bacterial hemoglobins

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1090 amino acids)

>MPMX19_00480 hypothetical protein (Azospirillum sp. SherDot2)
MSDPVAELVRAPSRSSDEARLYRLQFLASMALVSALVLGLGFYFVWQHWADLEHDLQQSE
ARYVEEQHQALVQEVENAQSYLAYMRSRVEPLLKEQLRAQVDEAYSIARSVHDREKDILP
EASVKESIKQTLRPLRFSGGRGYYFINDLNGESVLMPVDPSREGTSPFSAPDPQGAAVMR
ELMRAVQDPSLRGFARYRWRMPDDPVQTGDRSAVDKLAFVRRFEPYDWVIGASDALGAVE
ARLQHESLERLRAFRFGETGYVGVLRQDGQVLLSPTAPASEGMNARDLPWKTERDLVTRL
LELGRQGGGELRYDWIHPVTARPTPKMAYVSAPSVWGWILVAGFYIDDVGKEMEVRRAEI
SRGVNQRVWTTVAVLAVALAASVGVSWLVTGWIRRIVGGYQLRVRHSDSMLRERARQLYL
ANFFIDHVSEIVVLADAGLRIAYINPFGCQALGGTLEDLVMGQADLLKRFAAEGEDAASH
YETAYRTADGRTLELEVTASRITYEGDVYYSAIARDISERKRAEWQLRLSAKVFDNAAEG
MFVANEELEIVAANDAFSRITGYDRDEVLGRGPDFLRSDRNPSGFYEDLWVQLRESGHWA
GEIWSTRKNGEVFPEWLSVKLVRNEDGAVANYIAAFSDITATRAQEERIRHLAQFDFLTD
LPNRFLLRDRLERAMLAAGRHGTRVGLLFVDLDRFKTINDSLGHQVGDDLLREVAGRLTA
TVRASDTVSRQGGDEFIILINDMDGPDAAGIVARKVLHALSEPYLIDGHELQVTPSIGIA
IYPDDGTGIDGLLKSADMAMYAAKEAGRATYQFFTPELNRRASDRMWTESNLRRALANNE
LELHFQPQFSMDGRRLIGAEALVRWRQPDGTLIMPGQFIPVAEDTGLILPLGDWVLGEAC
RRAAELLRHHDLLIAVNLSAVQVRRPGLAERVAGWLSAYGIPPSALELEVTESVLMDESD
VVSETFARLRELGVPVAIDDFGTGYSSLAYLKRFRVDKLKIDRSFVSGLRAGNPDSGAIA
EAVIGMARSLRMQTLAEGVETEEQYGCLAEMGCDQCQGYLLGRPMPYEDFLEFVRRDAAA
AEPRVAEPVG