Protein Info for MPMX19_00476 in Azospirillum sp. SherDot2

Annotation: Protein RarD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 308 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 51 to 75 (25 residues), see Phobius details amino acids 82 to 103 (22 residues), see Phobius details amino acids 111 to 130 (20 residues), see Phobius details amino acids 137 to 154 (18 residues), see Phobius details amino acids 159 to 176 (18 residues), see Phobius details amino acids 186 to 207 (22 residues), see Phobius details amino acids 219 to 238 (20 residues), see Phobius details amino acids 250 to 268 (19 residues), see Phobius details amino acids 274 to 294 (21 residues), see Phobius details PF00892: EamA" amino acids 18 to 150 (133 residues), 33.4 bits, see alignment E=2.6e-12 TIGR00688: protein RarD" amino acids 19 to 267 (249 residues), 211 bits, see alignment E=1e-66

Best Hits

Swiss-Prot: 42% identical to RARD_STREX: Protein RarD (rarD) from Streptomyces exfoliatus

KEGG orthology group: K05786, chloramphenicol-sensitive protein RarD (inferred from 90% identity to azl:AZL_006610)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (308 amino acids)

>MPMX19_00476 Protein RarD (Azospirillum sp. SherDot2)
MAQTPPPAQAPTSTTAAFVAALASYLIWGLVNPVFFKSLGDVGAVEIVAHRVVWTVVLVG
VGVLATRGPAAVVAAVGNWRRLGILVVTTLLVTVNWTVFIWAVVNSRLVEASLGYFINPL
VNVLLGVLFLNERLSRGRILAVAIAAAGVGSLVVSYGAVPWVALSLALSFGFYALVRKKA
AIDPVIGLLVETALLLPAALGYLLWLGSDGAFGHGWGESTLLVLAGPMTAVPLVLFMIGA
SKLTMTTLGLLQYVGPTGQLLLGVLVYGEAFTHSHAITFACIWVALAVFTADAVHSHRAT
TRAAAAAE