Protein Info for MPMX19_00439 in Azospirillum sp. SherDot2

Annotation: Endolytic peptidoglycan transglycosylase RlpA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 192 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF03330: DPBB_1" amino acids 48 to 136 (89 residues), 84 bits, see alignment E=3.5e-28 TIGR00413: rare lipoprotein A" amino acids 49 to 141 (93 residues), 126.8 bits, see alignment E=5.8e-41

Best Hits

KEGG orthology group: None (inferred from 82% identity to azl:AZL_006250)

Predicted SEED Role

"Rare lipoprotein A precursor" in subsystem Peptidoglycan Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (192 amino acids)

>MPMX19_00439 Endolytic peptidoglycan transglycosylase RlpA (Azospirillum sp. SherDot2)
MKTTHIIVLALTAATLSGTAVPVLANEKAKVPPVHVEHEDGEEILVHKGEASFYSQKFHG
RTTANGETMNQNKATAASRTLPLGSKATVTNQENGKSVDVIVNDRGPYVDGRVIDLSRSA
AKKLDMIEDGTAPVKVEVKPSEQPTDTAREKVEEKVDQLTPGNQVAQGEGNRNSGNSGGS
RSDTVSHSGSGK