Protein Info for MPMX19_00355 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 287 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 89 to 115 (27 residues), see Phobius details amino acids 123 to 148 (26 residues), see Phobius details amino acids 154 to 174 (21 residues), see Phobius details amino acids 208 to 228 (21 residues), see Phobius details amino acids 253 to 276 (24 residues), see Phobius details PF00528: BPD_transp_1" amino acids 102 to 276 (175 residues), 80.7 bits, see alignment E=5.9e-27

Best Hits

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 96% identity to azl:AZL_005490)

Predicted SEED Role

"Pyrimidine ABC transporter, transmembrane component 1" in subsystem Pyrimidine utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (287 amino acids)

>MPMX19_00355 hypothetical protein (Azospirillum sp. SherDot2)
MTRRALPVTVMTLLLLAAWYIGAAWLNWPQAAETLVRANKPAGFADVLAQAYAMKRPILP
TPDQVVVELWNSLTGYAPTSPRNLLFHAWVTAEAALTGLAMGLALGILLAAGIVYTRTLE
ASLLPWVIASQTIPILAIAPMIVVILGNIGLTGLLPKAVICMYLCFFPITVGMVKGLRSA
DPLWLDLMRTYSASGLRAFWSLRLPASMPFLFASLKVSVAISVVGAIVGELPTGGQAGLG
ARLLSGSYYGQTVQIWAALIMASLLSVALIAVVRGLELVLLGRAGAR