Protein Info for MPMX19_00338 in Azospirillum sp. SherDot2

Annotation: Ribonuclease E

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1007 TIGR00757: ribonuclease, Rne/Rng family" amino acids 14 to 527 (514 residues), 537.5 bits, see alignment E=1.1e-165 PF10150: RNase_E_G" amino acids 222 to 493 (272 residues), 340.8 bits, see alignment E=6.1e-106 PF20833: RNase_E_G_Thio" amino acids 506 to 589 (84 residues), 109 bits, see alignment E=1e-35

Best Hits

KEGG orthology group: K08300, ribonuclease E [EC: 3.1.26.12] (inferred from 81% identity to azl:AZL_005310)

Predicted SEED Role

"Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-)" in subsystem Bacterial Cell Division or RNA processing and degradation, bacterial (EC 3.1.4.-)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.1.4.-

Use Curated BLAST to search for 3.1.26.12 or 3.1.4.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1007 amino acids)

>MPMX19_00338 Ribonuclease E (Azospirillum sp. SherDot2)
MAKRMLVDATHPEETRVAVVNGNRLEELDFEIASRKQLKGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYRIPMADREALLAEERRLEEQAEARAEAAADGAVMAEPIRPE
QVVEEWSPMPSPIAPEASDEEDGDDSGEDAEAGDEQAVPSEGAAPDTLGGDEDEEAETQR
RRSRPLRSYKIQEVVKRRQVMLVQVTKEERGNKGAALTTYLSLPGRYCVLMPNTGRGGGI
SRKITNPADRKRLKEILSDLDIPDGMAVILRTAGLERSKPEIKRDLEYLLRLWDDIREQT
LKSSAPCLIYEEANLIKRSIRDLYANDIDEIWVEGEAGFRTAREFMDMLMPGHSQRVQLY
RDSQIPLFHRYQVETQIDAIHSPVVQLRSGGYIVINPTEALVSIDVNSGKSTRERNIEET
AYKTNLEAADEVARQLRLRDLAGLIVIDFIDMEEPRNNAAVERRMKEAMKNDRARIQLGR
ISAFGLLELSRQRLRPSLLETNFERCPHCSGTGVVRSVESASLHVLRAIEEEGIRKRSAE
ITIFVPTSIALYILNQKRGELAKIEERHAFSVMVQADDTLIAPDHRLERNKARLADEDAP
LVSADRVMAETDRALAAEPVDMVEEPEVETEAVQVEETGERAETNGEGNGEDRRRRRRRR
RGRGRDREDGRTDGDNAEGDAETDEGDQDAGQDAGQDADESVLPVAAEAIPGAAISEPAA
DSADADAEGDDEDEDDGEDETGADAGERNGDGRKKRRRGKRGGRRRSRREGAEGLEGGED
AGDQQPAAAPVQGAPVQTAQASAEASDLDWILAGEAAPAVEEAPVPVTAPAPAQAETAAK
APARKASRKRKAAAEAPVEAAPEPTPAVVAEAPAKGRKRKAAAPVEAPVEAVAEATPKKA
ARKRKAAAEAPVEAAPEPTPAVVAEAPAKGRKRKAAAAVEAPAETVAEAAPKKASPRKRK
AAAEAPAEAAAKPTPAATPAPAPEPAAADNDADADADAKPRRGWWKR