Protein Info for MPMX19_00209 in Azospirillum sp. SherDot2

Annotation: Cbb3-type cytochrome c oxidase subunit FixP

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 296 transmembrane" amino acids 32 to 51 (20 residues), see Phobius details TIGR00782: cytochrome c oxidase, cbb3-type, subunit III" amino acids 9 to 295 (287 residues), 324.3 bits, see alignment E=3.4e-101 PF14715: FixP_N" amino acids 11 to 57 (47 residues), 84.9 bits, see alignment 3.5e-28 PF13442: Cytochrome_CBB3" amino acids 110 to 196 (87 residues), 39.5 bits, see alignment E=9e-14 amino acids 208 to 289 (82 residues), 55.7 bits, see alignment E=7.5e-19 PF00034: Cytochrom_C" amino acids 113 to 199 (87 residues), 58.1 bits, see alignment E=2.9e-19 amino acids 210 to 292 (83 residues), 34.9 bits, see alignment E=4.7e-12

Best Hits

Swiss-Prot: 94% identical to CCOP_AZOS1: Cbb3-type cytochrome c oxidase subunit CcoP (ccoP) from Azospirillum sp. (strain B510)

KEGG orthology group: K00406, cb-type cytochrome c oxidase subunit III [EC: 1.9.3.1] (inferred from 94% identity to azl:AZL_003380)

Predicted SEED Role

"Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)" in subsystem Terminal cytochrome C oxidases (EC 1.9.3.1)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.9.3.1

Use Curated BLAST to search for 1.9.3.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (296 amino acids)

>MPMX19_00209 Cbb3-type cytochrome c oxidase subunit FixP (Azospirillum sp. SherDot2)
MAQNYKDELSGVETTGHEWDGLRELNNPLPKWWLYLFYVCIAWAMVYYVFYPAWPLGKTY
TKGILGYSQREELDTRMAEAKAGQAKFLTAIAAKSVDEIQKDKDLLGFAMAGGRSYFNEN
CAACHGAGGQGAKGFPTLADDVWLWGGSSADIYKTIQHGIRSDDGDTRGTPNVGMTAFGK
DSILNRDQIDQVTDYVLSLNGKTADAGKATKGKAVYDENCAACHGDAAQGSVAAGVDGVG
APPLRQANWLYGSDKQTLVETVTNGRAGVMPAWSKRLDDATIKSLAVYVHNLGGGK