Protein Info for MPMX19_00175 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2265 transmembrane" amino acids 1318 to 1339 (22 residues), see Phobius details amino acids 1343 to 1363 (21 residues), see Phobius details PF20155: TMP_3" amino acids 72 to 262 (191 residues), 183.4 bits, see alignment E=2e-58 TIGR02675: tape measure domain" amino acids 146 to 220 (75 residues), 75.2 bits, see alignment (E = 1.9e-25)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (2265 amino acids)

>MPMX19_00175 hypothetical protein (Azospirillum sp. SherDot2)
MADFPGMMVPVGADDSGLRRVLSQAEARVDQFAGRVDGSVRRAAGSFDALGSAAGRVAGV
VAGIGLAQGAGEAIKAADAWSLSTSKIALYAGAGEKAVAVQEQLFQAAQRARSAMEPTVG
LYTSLADAALTMGKSQGQVIRLTETISKTFKISGTEAGTAAGALVQLSQAMASGVLRGDE
FNSVMEASPRLAKALAEGLGVPRGALKSLAEQGALTADKVVNALLKQSTAIDTEFGHMAT
TVSDSLTVLANTAQRQIGRMNQAVGLTAGISSGILVLADNLDAVTKAAGAAALALGAIAA
ARTMPTGIAAVTQAIDDQRVALYAKAVATAEAATAEKLAAAQDLIRAQTARAATVATVQA
AEAEFAAKAAAASSAATTLASAESALTSARAKTALTTNVYVLAKALATERDAEATVVMAR
EASIAADAEKMASLARLRAAQLATAAAGEAVVVADAHLTTMAVSANAASVALAQRASLLT
AAWNGVKAAGAGMLGVVGGPWGAALLAGAAAVAVFATRTTAAEAAADSFEHAQRAAQDAV
KDSAADVEQLATQYGRLSDSMRAVTRIKLDEALAEQAKAIVAQRSAASAAVYRPDSVARP
VAGDWNVSTDSASAARVYEQMGLAADQVDRLRVAFQAFRSAAADDPEAIANLVRVLDEVG
RNAGAAGKPLLELAQHLADPATKAEAAAKTSKELAARLALLANPADEAAKAVLAAGQTAD
TAASRFAGLGSAVGGVASKLAELGAKSWTLSLPEGLERRVGEMVGPPPEQKTPVVTGLQD
RGRSSDDTAYQTWDAQRDVVRGRLKSQIVPAESAEAVRLLKLEADATEKLARARASGNPA
TIKAAEVEVEVAKRLREGLDPAQEGSTRTQLLRKARAELAGEVGAQVTQLTMDVAAQQRL
AAAAGKGEAAQRAAAAANRVAAAGLKGYGDAAAAAEARVEALTVQQLRKDADQPIQDRIR
SARTLMDTYEQGPKAVKAAEVAEQAHTLALKEGEEGTQKYNEAKAHYIELLTQAQQLESA
AAAGPLLQQQRDQLELGRQQLELIGASAEMRAVELARTQALIDLREHNIDAASREGQAYL
ANAEALARQNLALERTNAAYQELEQVGDRSFDAILQKLSAAGKSTMSWADAIGTVSVELQ
QLALKMAVINPLKNWVMGSNLPTVFDLFGGSSGQTGQTGQGGGIGGSLTNTALSKGAGWA
MDKLGIGGSGGIGGLIDSFGYSALGIGTVGGWAAAAPASVTAATAAPITGAASANAATGV
AAAGNTAAANTLYTGSASGVSGAGITGGLSAYLGAAGAGAFDGAIGGMLGTATNSKAVGG
LSGAALGAGASALAAYMGLGAIGGPIGLAIGAVVGGIMGMLGTQKATVGPNSSGNIVLNG
KGGFRTDTALADNGADAGQMQQVTDAVAASMNAIVSGIGGKLTGGDGANTALIQQFAKDG
KWYVTPTVGEKAGQKTAFTDQNEAIAFYMRESLKGLIGTGQLTGVNDDVRKALTTSKATK
AEDLANDLGFAAGFRQQLDVMNASLDPTNNLLKTFTENAKAIGDQVKTNITDWRSKASEL
GLATETELTAAARKGIEAMMGLGPATKPLVGMAAATKQAEIEFEQFRPALLSLGYTTGEV
AELAARYTKKLQDSYADAVAYVQRQGAVAIEALIDPNAKSSALDRLQGLGLDRTNAAVAG
LAGVIEGVEQAASGGTLTIEAERAALGRLNSALYDGTIGGDQYTAMVGYLTQAWQDSADA
AQTAAEKAKALSAYQTDIASRMVAALGNSRGAGLIALDAQQAAALADAKAAGYDTAQLRL
VQAAERGAQAFTLAQQDLLDAYDREIAAKQEVVDSIQSGAIALLQAAQQFKDARAALREG
DDSPLAPRQKIQEATDRFDAAYAVLKDSSSTDAEKDTARQTLLQVGPTLVALEKAASGGT
ASVLFDKVDKVFAELGDTGGLSLDTATQDLQVAQDQLKELQKARAEAAAIGQRQLGSLSS
LRDVMDQSYAVWQAALTPLMTLTGTTDNRPHYSAPAAVQSAWDGLSGEQRHGIARAMGWG
GDIDEAFNLWLATSTQRATTFGADVTAIAGGARYGAPDDVGRAWDALTQAQQLAAVRGAG
YDGGLDSGLNAWVKLGHQSAFEAAVRAQAHGAGIPGFATGTLATPPGAVWVGERGPELLW
QGGGAAVASSADSLRIASAFDAAVNGLAPPAAMVSFRRPDLDAGGAGVAELLEAVEGLRD
EVRALGRDALTQRARIGADAAALLARVEAATGDLPRKLANTRRAA